PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna09110.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bZIP

Protein Properties

Length: 488aa MW: 52096.4 Da PI: 9.7723

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna09110.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.4	1e-15	370	420	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++Lkk+ +e+ ++ mrna09110.1-v1.0-hybrid 370 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELKKKQDEMMEL 420 79*****************************************99988775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-15	363	419	No hit	No description
SMART	SM00338	1.8E-13	366	431	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.484	368	419	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-13	370	420	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.19E-11	370	419	No hit	No description
CDD	cd14707	3.76E-27	370	424	No hit	No description
PROSITE pattern	PS00036	0	373	388	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MGANMNFKGF MTDFQGDGGG RPPGINNNNN SNALAREASI YSLTFDELQN SMGGPGKDFG 60 SMNMDELLKS IWSAEETQTM VPSGVVTGGQ DGYSQGHLPL QRQGSLTLPR TLSQKTVDEV 120 WRNLSAKEEN GGTAGPKAPQ RQQTLGEMTL EEFLVRAGVV REDGQVGSKL GGSGFFGELA 180 RFGNGGGGGV GFGFQQPDRG SVGVMGSRIS ENGNQIGNLN SNMPLNANGV RSSQQQQQAP 240 QQQPQQLQIF PKQQPVTYST SQMALGPNSQ LGSPGMRGGI MGIGEQGINN ALVQSPVLQG 300 GGGGGMGMVG LGAGNGRVAA VSPANQLSSD GIGNGKSNGT DTSSVSPMPY VFNNGFRGRK 360 GGPVEKVVER RQRRMIKNRE SAARSRARKQ AYTMELEAEV AKLKEENQEL KKKQDEMMEL 420 QKNQLIDHLE FVNFAGYRDS KSSKRRQETL LETNTDRSMV KCRAWGSGLH CGKGGGCTYL 480 RIMCLVL*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MGANMNFKGF MTDFQGDGGG RPPGINNNNN SNALAREASI YSLTFDELQN SMGGPGKDFG  60
SMNMDELLKS IWSAEETQTM VPSGVVTGGQ DGYSQGHLPL QRQGSLTLPR TLSQKTVDEV  120
WRNLSAKEEN GGTAGPKAPQ RQQTLGEMTL EEFLVRAGVV REDGQVGSKL GGSGFFGELA  180
RFGNGGGGGV GFGFQQPDRG SVGVMGSRIS ENGNQIGNLN SNMPLNANGV RSSQQQQQAP  240
QQQPQQLQIF PKQQPVTYST SQMALGPNSQ LGSPGMRGGI MGIGEQGINN ALVQSPVLQG  300
GGGGGMGMVG LGAGNGRVAA VSPANQLSSD GIGNGKSNGT DTSSVSPMPY VFNNGFRGRK  360
GGPVEKVVER RQRRMIKNRE SAARSRARKQ AYTMELEAEV AKLKEENQEL KKKQDEMMEL  420
QKNQLIDHLE FVNFAGYRDS KSSKRRQETL LETNTDRSMV KCRAWGSGLH CGKGGGCTYL  480
RIMCLVL*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna09110.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004291101.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Refseq	XP_011458927.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	1e-108	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A2D1UXF0	0.0	A0A2D1UXF0_ROSHC; ABRE binding factor
TrEMBL	A0A2P6Q0K4	0.0	A0A2P6Q0K4_ROSCH; Putative transcription factor bZIP family
STRING	XP_004291101.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1962	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	4e-86	abscisic acid responsive elements-binding factor 2

Link Out ? help Back to Top
Phytozome	mrna09110.1-v1.0-hybrid

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]