PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09283.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 405aa    MW: 45068.2 Da    PI: 7.9516
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09283.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.4e-07133153526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               C +++r G C++Gd+C FaHg
  mrna09283.1-v1.0-hybrid 133 VCADYRR-GGCSRGDSCEFAHG 153
                              799****.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.7E-5128154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.756129155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5132155IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-5133153IPR000571Zinc finger, CCCH-type
SMARTSM003563.8163186IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSSVCAEQHK FHTSHHLLSS KKSHHLLREV DIPPRKLLTR RSAAHQDISS SPDMYDSPRF  60
SASDEAVLRK FLPYNSDDDD DDPYSSDHFR MYEFKVRRCT RSRSHDWTDC PFAHPGEKAR  120
RRDPRCYHYS GTVCADYRRG GCSRGDSCEF AHGVFECWLH PARYRTEACK DGKHCKRKVC  180
FFAHTPHQLR ILPVNHSRSS SPDEVVISPG SGCCKKSSKY LNNSANSPSS THCCSFCRSV  240
TCSPTSTLLG MSPMSPYGDE SKCHFSSGFN QMHAGSAGMP SYKDVLSELM TSLEKMKVNN  300
MEAATTPVSS PISSVASSYR NTPWVDVSSY NAFAEDQQQQ FILSPNSIPS PLSAGTNFFS  360
HRCSSGNGSR KSLVFDEQNK ATDIYGGGCN SPDPDLGWVN DLLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09283.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301223.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
TrEMBLA0A2P6RU250.0A0A2P6RU25_ROSCH; Putative transcription factor C3H family
STRINGXP_004301223.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-71C3H family protein