PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna09379.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 388aa MW: 42640.5 Da PI: 4.644

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna09379.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	58	2e-18	287	366	1	80
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 l++lL++cAeav+ +d a++lL+++++++sp gd +qRla++f++AL+arla+++sely +l+++++s + s+ a mrna09379.1-v1.0-hybrid 287 LRRLLISCAEAVAVDDRGTASELLKQIRQHSSPFGDYTQRLAHCFANALEARLAGTGSELYTTLATKRASAADISKFYRA 366 689*************************************************************9999997666555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.894	261	387	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.9E-16	287	366	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MDSSFSEYPN FEDQTLLLDM LNEYPSTDSF DDLSFLDPNP MNSALSSSFS PVADDGEFSD 60 SVIKHINKVL MEEDMEPKPC MFHDPLVLQA TEESLYEVIE GGKCSTSQDQ NPHWVDQNEY 120 GNGNGMVGSY RSELMVPDAV SKNELLVQFN RGLEDGCKFL PRGQLITAEG NKTYDVANSK 180 AGNVVVTTQK NDSEHVHVGS RGKKSHQREE IDLEDGRINK QSAVYMDDVE GELSDSFGKA 240 LLSGKAVESK EDQVCQNGAN NGLQQDVLVS QKACGMKRGN KKEVIDLRRL LISCAEAVAV 300 DDRGTASELL KQIRQHSSPF GDYTQRLAHC FANALEARLA GTGSELYTTL ATKRASAADI 360 SKFYRAYIAG WKGRIMLGSA CWAPSRT*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MDSSFSEYPN FEDQTLLLDM LNEYPSTDSF DDLSFLDPNP MNSALSSSFS PVADDGEFSD  60
SVIKHINKVL MEEDMEPKPC MFHDPLVLQA TEESLYEVIE GGKCSTSQDQ NPHWVDQNEY  120
GNGNGMVGSY RSELMVPDAV SKNELLVQFN RGLEDGCKFL PRGQLITAEG NKTYDVANSK  180
AGNVVVTTQK NDSEHVHVGS RGKKSHQREE IDLEDGRINK QSAVYMDDVE GELSDSFGKA  240
LLSGKAVESK EDQVCQNGAN NGLQQDVLVS QKACGMKRGN KKEVIDLRRL LISCAEAVAV  300
DDRGTASELL KQIRQHSSPF GDYTQRLAHC FANALEARLA GTGSELYTTL ATKRASAADI  360
SKFYRAYIAG WKGRIMLGSA CWAPSRT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna09379.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294644.1	0.0	PREDICTED: scarecrow-like protein 14
TrEMBL	A0A2P6QIZ9	0.0	A0A2P6QIZ9_ROSCH; Putative transcription factor GRAS family
STRING	XP_004294644.1	0.0	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	3e-48	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	mrna09379.1-v1.0-hybrid