PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09930.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 240aa    MW: 27364.5 Da    PI: 8.974
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09930.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.4e-11116205182
                              EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT CS
                       B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.eg 77 
                              f+k+lt+ dv +  +rl ++k+++++        +++ ++++++t +d++g+s+ + ++++ ++   vlt+GW  F+++++L    
  mrna09930.1-v1.0-hybrid 116 FEKQLTHTDVKNDqARLAMSKEHVQKRlipllneNEDLRRGIQVTTYDSEGKSYPMVFKIWVGK-LPVLTGGWTAFCQDHNLVeMQ 200
                              99********998899********999***998744555999****************999987.579*************98578 PP

                              -EEEE CS
                       B3  78 DfvvF 82 
                              Dfv+ 
  mrna09930.1-v1.0-hybrid 201 DFVTV 205
                              98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0024116220IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-14116218IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-15116220No hitNo description
PfamPF023621.0E-7116205IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-14116221IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MARLANEEDD EMMKAVFNLC HMKHALVDST KDKLFIKEQG DAFTVNVARG LPRNQRLQHD  60
VKRKALQISE QEAIYVGQGS ANSNIPQGLF YGNYVPPSLP PVPSLRQFIG ICSEPFEKQL  120
THTDVKNDQA RLAMSKEHVQ KRLIPLLNEN EDLRRGIQVT TYDSEGKSYP MVFKIWVGKL  180
PVLTGGWTAF CQDHNLVEMQ DFVTVWMFRN VATGCLCFVI DSRRLPVLET IKRRRTRSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09930.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024171463.11e-138uncharacterized protein LOC112177403
TrEMBLA0A2P6P5L31e-136A0A2P6P5L3_ROSCH; Putative transcription factor B3-Domain family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.12e-30B3 family protein