PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10203.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 169aa    MW: 18865.6 Da    PI: 8.4659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10203.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.00023971242355
                              HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              L++llP+       K++ a++Le A +Y++ Lq
  mrna10203.1-v1.0-hybrid  97 LQKLLPWE-----NKMDTATMLESAHRYVRFLQ 124
                              99*****7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.12174123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.002179129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-888133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-890132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-497128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MDDRLFSPIS TELPLYQYGV VLSPNDYSIF NHLPNLLTLD NSPYKRTRLL DSTHHTLAAS  60
SAYQLYPSPS VVAPCGRRLA SERRQSGQTL SDKTRCLQKL LPWENKMDTA TMLESAHRYV  120
RFLQAQVAAL QAMPIVASDF SLPVLTRGGG EDWFWGRCGP GFLVFTVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10203.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463010.11e-73PREDICTED: uncharacterized protein LOC105351134
TrEMBLA0A2P6S2I03e-49A0A2P6S2I0_ROSCH; Putative transcription factor bHLH family
STRINGXP_010109560.15e-22(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.12e-14bHLH family protein