PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10469.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 340aa    MW: 37992.6 Da    PI: 7.2935
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10469.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.13e-52111361129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhP+deelv++yL kkv++++ +l   + evd++k+ePwd+p+++  + kewyf+s+rd+kyatg r+nrat++gyWkat
  mrna10469.1-v1.0-hybrid  11 LPPGFRFHPRDEELVCDYLMKKVTHSDSTL---MIEVDLNKCEPWDIPENACVGGKEWYFYSQRDRKYATGLRTNRATATGYWKAT 93 
                              79***********************99666...889************7777799******************************* PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                              gkd+++++k+++lvg++ktLvfy+grapkg+k+dWvmhe+rle
  mrna10469.1-v1.0-hybrid  94 GKDRPIFRKGTTLVGMRKTLVFYQGRAPKGRKSDWVMHEFRLE 136
                              ****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-592160IPR003441NAC domain
PROSITE profilePS5100556.0211159IPR003441NAC domain
PfamPF023657.5E-2712135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSNISMVEAK LPPGFRFHPR DEELVCDYLM KKVTHSDSTL MIEVDLNKCE PWDIPENACV  60
GGKEWYFYSQ RDRKYATGLR TNRATATGYW KATGKDRPIF RKGTTLVGMR KTLVFYQGRA  120
PKGRKSDWVM HEFRLEGPFG PPKISPGKED WVLCRVFYKN RELIAAKPSM GSSISCYEDD  180
TGSSSHHLPA LMDSYISFDG PTPQLHHDNE YLRHHQQVPC FSIDTLFSQN QMTTNPNFTT  240
TSYGNILEQN AGCGGELSNA GTSTFLDNAN FSSDNKKVLK AVLSQLTKME TSCYPNTPSS  300
VFKGSSPSSF GGEFEAAGSS SDNYLSDHQV GMPSVWSHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-48716211171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10469.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294208.10.0PREDICTED: NAC domain-containing protein 21/22-like isoform X1
RefseqXP_011460868.10.0PREDICTED: NAC domain-containing protein 21/22-like isoform X2
SwissprotQ84TE61e-112NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2P6Q9040.0A0A2P6Q904_ROSCH; Putative transcription factor NAM family
STRINGXP_004294208.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100103241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-112NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]