PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10712.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LSD
Protein Properties Length: 158aa    MW: 16365.2 Da    PI: 8.2043
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10712.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.11.4e-134064125
                  zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                             C+gCr+lL YP GA+sV+Ca+C++V
  mrna10712.1-v1.0-hybrid 40 CSGCRNLLLYPVGATSVCCAVCNAV 64
                             ************************9 PP
2zf-LSD146.65.5e-1579103125
                  zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                              CggC+tlL+Y rGA+sV+C++C+tV
  mrna10712.1-v1.0-hybrid  79 CGGCHTLLMYIRGATSVQCSCCHTV 103
                              ************************9 PP
3zf-LSD141.71.9e-13117141125
                  zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                              Cg+Cr lL+Y +GA+sV+Ca+C++V
  mrna10712.1-v1.0-hybrid 117 CGNCRMLLMYQYGARSVKCAVCNFV 141
                              ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.103.8E-431138No hitNo description
SuperFamilySSF486951.53E-537138IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.1E-123767IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-104064IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.0E-1476105IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-1279103IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.5E-12114144IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-12117141IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MHLKAKNIMP VPLAPYPTPP APYTPPAAAA ANGAQSQLVC SGCRNLLLYP VGATSVCCAV  60
CNAVTAVPPP GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC  120
RMLLMYQYGA RSVKCAVCNF VTSVGVSTST PEQKFTN*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10712.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300252.11e-110PREDICTED: protein LOL1
SwissprotQ93ZB12e-81LOL1_ARATH; Protein LOL1
TrEMBLA0A2P5C7N21e-92A0A2P5C7N2_PARAD; Zinc finger, LSD1-type
STRINGXP_004300252.11e-109(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.34e-67lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]