PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10772.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 264aa    MW: 29488.9 Da    PI: 10.0214
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10772.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.89.2e-1616104186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                              +Wt++e +aLi + ++++++l+r++lk ++W++v++ +         +++++qC +k+e+l+kr++ +k +++ r +++ s ++++
  mrna10772.1-v1.0-hybrid  16 CWTDDEAQALISVFKQKWTSLNRTNLKSHDWDDVAASLaaqfPLVSPSKTAVQCHNKIEKLRKRFRSEKLRASTR-PGRFSPWALY 100
                              8*************************************544333455999*******************999997.7777799999 PP

                 trihelix  83 dqle 86 
                                +e
  mrna10772.1-v1.0-hybrid 101 PFME 104
                              8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.8E-1715105No hitNo description
PROSITE profilePS500906.3071777IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSSPTAAPPR KFPPPCWTDD EAQALISVFK QKWTSLNRTN LKSHDWDDVA ASLAAQFPLV  60
SPSKTAVQCH NKIEKLRKRF RSEKLRASTR PGRFSPWALY PFMEDLESHN HPSAKPDAGS  120
GFLAALDEFV GLGDDAHFPV KSLGNRNLGT YVTPKSHEEE EFNPKRKVKL ASGSGVLRSS  180
NVKEVDPVGA IVSSIRLLGE KYMEVEKRKM EMAREIVMMQ MDMEMKQTQA VMESQQQMVN  240
VCVSALLDSK KKKRKIKAVP TDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10772.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300321.10.0PREDICTED: uncharacterized protein LOC101308467
TrEMBLA0A2P6P9001e-101A0A2P6P900_ROSCH; Putative transcription factor MYB family
STRINGXP_004300321.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137971421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-22Trihelix family protein