PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna10779.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Trihelix

Protein Properties

Length: 392aa MW: 44432 Da PI: 10.0887

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna10779.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.5	3.6e-18	78	168	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +Wt++e + Li a+r+++ +lrr++lk+++W++v+k+ ++ +++ qC++k+e+l+kry+++k+++++ + s++++ mrna10779.1-v1.0-hybrid 78 CWTQDEAQSLILAYRDRWFALRRANLKAADWDHVAKATaaassSSSSPPKTALQCRHKMEKLRKRYRAEKQRASNYPGRFFSSWAL 163 8***********************************888877777799*********************9999999 PP trihelix 82 fdqle 86 f+ ++ mrna10779.1-v1.0-hybrid 164 FHLMD 168 998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.7E-18	77	170	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MVGLTQARTR SGPIVPGGTP FPSPHRATRP RQHYLTAFIH HQPQCPPLYL SSSTKPTTSP 60 TIMSTTVVTK PRRVPPPCWT QDEAQSLILA YRDRWFALRR ANLKAADWDH VAKATAAASS 120 SSSSPPKTAL QCRHKMEKLR KRYRAEKQRA SNYPGRFFSS WALFHLMDEM ESDPDRKPID 180 EGEFGGKGRN LVNVDRSFSP NGDFDGIGGS VFDLGNELYQ NSRFNYRFGE NSGFYSEDNE 240 YVNRGGFPSR TRSNGKSDVN LNNSFNQHRD YGIRSDRDYV PSGSLKRNAH CKEFDGYASL 300 SGSKFGKKRS VVGMERDVDP VADLASSIMM LGEGFERMER MKMEMTWEIE KRRMETELKR 360 TEAMNESLQQ FVDALLERKK KKKAMVESSH A*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MVGLTQARTR SGPIVPGGTP FPSPHRATRP RQHYLTAFIH HQPQCPPLYL SSSTKPTTSP  60
TIMSTTVVTK PRRVPPPCWT QDEAQSLILA YRDRWFALRR ANLKAADWDH VAKATAAASS  120
SSSSPPKTAL QCRHKMEKLR KRYRAEKQRA SNYPGRFFSS WALFHLMDEM ESDPDRKPID  180
EGEFGGKGRN LVNVDRSFSP NGDFDGIGGS VFDLGNELYQ NSRFNYRFGE NSGFYSEDNE  240
YVNRGGFPSR TRSNGKSDVN LNNSFNQHRD YGIRSDRDYV PSGSLKRNAH CKEFDGYASL  300
SGSKFGKKRS VVGMERDVDP VADLASSIMM LGEGFERMER MKMEMTWEIE KRRMETELKR  360
TEAMNESLQQ FVDALLERKK KKKAMVESSH A*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	376	382	ERKKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna10779.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301730.2	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A2P6P8Z0	1e-123	A0A2P6P8Z0_ROSCH; Putative transcription factor Trihelix family
STRING	XP_004301730.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13797	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-36	Trihelix family protein

Link Out ? help Back to Top
Phytozome	mrna10779.1-v1.0-hybrid