PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10841.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 297aa    MW: 31584.3 Da    PI: 7.2479
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10841.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19157207255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  mrna10841.1-v1.0-hybrid 157 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRMRG 207
                              8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-32156215IPR001471AP2/ERF domain
CDDcd000188.24E-31156215No hitNo description
SuperFamilySSF541713.4E-23157217IPR016177DNA-binding domain
PROSITE profilePS5103224.21157215IPR001471AP2/ERF domain
SMARTSM003801.3E-39157221IPR001471AP2/ERF domain
PfamPF008471.2E-13157207IPR001471AP2/ERF domain
PRINTSPR003676.2E-11158169IPR001471AP2/ERF domain
PRINTSPR003676.2E-11181197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MYGQSGSDAD FTLLDSIRRH LLGESINYNY NCNPVTNSGA GPIFSRSSSF SSLYPCLTEN  60
WGELPLKEDD SEDMVLYGVL RDAVSVGWVP SLGSDGCGLE FAVKSEPCSF EYEVKSEPEE  120
AVVSRSPETN SAVVAVTQQS AAAVQAKPAV VAAKGKHYRG VRQRPWGKFA AEIRDPAKNG  180
ARVWLGTFET AEDAALAYDR AAYRMRGSRA LLNFPLRVNS GEPDPVRVTS KRSSPEPASS  240
SESGSPKRRK KVAAAAAAAV QAGMEMGSGI GIGRQQQQVG GQVGVSCTRG EQLLVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-44153222170ATERF1
3gcc_A5e-44153222170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245251PKRRKKV
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10841.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9269022e-74AB926902.1 Rubus palmatus gene for ethylene-responsive transcription factor homolog, partial cds, isolate: pEB-06_28.
GenBankAB9269072e-74AB926907.1 Rubus palmatus gene for ethylene-responsive transcription factor homolog, partial cds, isolate: pEB-18_28.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300354.10.0PREDICTED: ethylene-responsive transcription factor 2
SwissprotO803376e-87EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A3S8T9931e-175A0A3S8T993_FRAAN; Transcription factor ERF73
STRINGXP_004300354.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.14e-59ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]