PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11073.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 67aa    MW: 7518.11 Da    PI: 11.7625
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11073.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.87.6e-151245134
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdae 34
                             k+i+n   rqvtf kRr g+lKKA EL vLCd e
  mrna11073.1-v1.0-hybrid 12 KKIDNLPVRQVTFLKRRRGLLKKAGELLVLCDCE 45
                             6899999*************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-10463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.67445IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-16545IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-12626IPR002100Transcription factor, MADS-box
PfamPF003194.0E-121345IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-122641IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MTKRARNKIK IKKIDNLPVR QVTFLKRRRG LLKKAGELLV LCDCENFKVK TRPNVGSISP  60
VSVPSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11073.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299728.15e-19PREDICTED: MADS-box protein JOINTLESS-like
RefseqXP_011464657.15e-19PREDICTED: MADS-box protein JOINTLESS-like
RefseqXP_011464658.15e-19PREDICTED: MADS-box protein JOINTLESS-like
TrEMBLA0A2P6PH146e-14A0A2P6PH14_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004299728.12e-18(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.11e-09AGAMOUS-like 24