PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna11436.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 232aa MW: 25855.3 Da PI: 6.3711

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna11436.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.3e-09	77	124	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 a+ rE+ RR+r+N++f L +l + + K +K +iL A++ + +L mrna11436.1-v1.0-hybrid 77 AKACREKLRRERLNDKFLDLSAVLEPG---RPAKTDKPAILDDAIRVLTQL 124 6778********************8...89************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.871	73	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-6	77	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.78E-7	77	129	No hit	No description
SuperFamily	SSF47459	5.23E-12	79	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-8	79	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-10	79	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009005	anatomy	root
PO:0007134	developmental stage	sporophyte vegetative stage

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MDAMEGIEDF FGYNSLIDET QFPNFLWSNP NPTPSFHEIE FSANSGVAAS AAPSSQTQEK 60 ECSRKRGRTE SWCGSGAKAC REKLRRERLN DKFLDLSAVL EPGRPAKTDK PAILDDAIRV 120 LTQLRAEAQE LTQTNEKLLE EIKSLKAEKS ELREEKVVLK ADKERLEQQL KAMTIPPSGF 180 MPAHPAVPAA YHPGASKMAV YPSYGMIPMW HYLPPSTRDT SRDHELRPPA A*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00102	PBM	Transfer from AT4G14410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna11436.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ830737	6e-50	DQ830737.1 Fragaria vesca clone 0-3R T-DNA insertion flanking sequence.
GenBank	HQ184974	6e-50	HQ184974.1 Fragaria vesca clone VT_A03_R T-DNA insertion flanking sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004296358.1	1e-172	PREDICTED: transcription factor bHLH104
Swissprot	Q8L467	5e-83	BH104_ARATH; Transcription factor bHLH104
TrEMBL	A0A2P6QQR3	1e-150	A0A2P6QQR3_ROSCH; Putative transcription factor bHLH family
STRING	XP_004296358.1	1e-172	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8179	25	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14410.2	3e-81	bHLH family protein

Link Out ? help Back to Top
Phytozome	mrna11436.1-v1.0-hybrid

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Wang C,Yao X,Yu D,Liang G Fe-deficiency-induced expression of bHLH104 enhances Fe-deficiency tolerance of Arabidopsis thaliana. Planta, 2017. 246(3): p. 421-431 [PMID:28451750] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Min JH, et al. A basic helix-loop-helix 104 (bHLH104) protein functions as a transcriptional repressor for glucose and abscisic acid signaling in Arabidopsis. Plant Physiol. Biochem., 2019. 136: p. 34-42 [PMID:30639920]