PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna11440.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

ERF

Protein Properties

Length: 138aa MW: 15147.8 Da PI: 8.4393

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna11440.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.6	8.6e-20	22	72	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd + + +r++lg+f taeeAa+a+++a+ +++g mrna11440.1-v1.0-hybrid 22 RYRGVRRRP-WGKFAAEIRDS---NrHGQRVWLGTFNTAEEAARAYDRAAYAMRG 72 6******.******4...3234***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.709	22	80	IPR001471	AP2/ERF domain
CDD	cd00018	4.01E-17	22	81	No hit	No description
Pfam	PF00847	1.8E-15	22	72	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.29E-23	22	81	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.2E-31	22	82	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-35	22	86	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-11	23	34	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-11	46	62	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MAEDRRGGKV QTGEGKDAGE VRYRGVRRRP WGKFAAEIRD SNRHGQRVWL GTFNTAEEAA 60 RAYDRAAYAM RGGLAILNFP NEYPSGTTVG SSSSSSSAFS SSSSSMQAGN QVLELEYLDD 120 RLLEELLDCE EMKSKKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-40	11	122	3	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna11440.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297818.1	5e-97	PREDICTED: ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LTC5	3e-41	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A3Q8TD05	6e-95	A0A3Q8TD05_FRAAN; Transcription factor ERF83
STRING	XP_004297818.1	2e-96	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	6e-26	ERF family protein

Link Out ? help Back to Top
Phytozome	mrna11440.1-v1.0-hybrid

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]