PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna11645.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 223aa MW: 26316.8 Da PI: 8.6404

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna11645.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42	3.1e-13	159	216	1	60
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrt 60 +fYn+YA++ GFs+r++ k ++ t+rtfvC keg+r+e+k++ + ++++ra+tr+ mrna11645.1-v1.0-hybrid 159 NFYNAYARSEGFSIRRDGYGKD-KKSVLTSRTFVCCKEGFRKEDKRD-DLTKNPRAQTRM 216 6**************98888.5556***************999.888888888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-10	159	214	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MEGDEDDVEW IWSWLALDVE ETEVVKEWGH GAANLKRGIW QSKEKGKEIW MWFSILREMR 60 KESGSSPHER LLLFSHESIS AFYFHVLHVL WLRQRRPPRP LSLHDVLHHI PSFQLFTTGF 120 EVLRVEKSVG ENNNSLEKSK KDLKPKYYME FDSKIAAFNF YNAYARSEGF SIRRDGYGKD 180 KKSVLTSRTF VCCKEGFRKE DKRDDLTKNP RAQTRMWSDY GD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna11645.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-09	FAR1 family protein

Link Out ? help Back to Top
Phytozome	mrna11645.1-v1.0-hybrid