PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11939.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 814aa    MW: 91078.7 Da    PI: 7.5083
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11939.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.3e-18583635456
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              +++++ +q+++Le  Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  mrna11939.1-v1.0-hybrid 583 KRRLSLHQVKALEISFEVENKLEPERKVKLAEELGLEPRQVAIWFQNRRARWK 635
                              457899**********************************************9 PP
2HD-ZIP_I/II124.35.6e-40582673293
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              kkrrls +qvk+LE sFe e+kLeperKv+la+eLgl+prqva+WFqnrRAR+ktkqlE+dy++Lk+ ydalk++ ++Le++++ L
  mrna11939.1-v1.0-hybrid 582 KKRRLSLHQVKALEISFEVENKLEPERKVKLAEELGLEPRQVAIWFQNRRARWKTKQLERDYSVLKADYDALKDNYDSLERQNKVL 667
                              9************************************************************************************* PP

              HD-ZIP_I/II  88 reelke 93 
                              +e+lke
  mrna11939.1-v1.0-hybrid 668 AEKLKE 673
                              **9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF517131.2E-139132494IPR002616tRNA-guanine(15) transglycosylase-like
Gene3DG3DSA:3.20.20.1051.1E-163132494IPR002616tRNA-guanine(15) transglycosylase-like
HamapMF_0016846.26134490IPR004803Queuine tRNA-ribosyltransferase
TIGRFAMsTIGR004492.3E-124136494IPR002616tRNA-guanine(15) transglycosylase-like
TIGRFAMsTIGR004301.1E-128136493IPR004803Queuine tRNA-ribosyltransferase
PfamPF017021.6E-86259490IPR002616tRNA-guanine(15) transglycosylase-like
PROSITE profilePS5007116.568577637IPR001356Homeobox domain
SuperFamilySSF466891.54E-17579639IPR009057Homeodomain-like
SMARTSM003897.6E-17580641IPR001356Homeobox domain
CDDcd000862.13E-16582638No hitNo description
PfamPF000465.3E-15583635IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-18584644IPR009057Homeodomain-like
PRINTSPR000315.5E-5608617IPR000047Helix-turn-helix motif
PROSITE patternPS000270612635IPR017970Homeobox, conserved site
PRINTSPR000315.5E-5617633IPR000047Helix-turn-helix motif
PfamPF021834.2E-14637678IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006400Biological ProcesstRNA modification
GO:0008616Biological Processqueuosine biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008479Molecular Functionqueuine tRNA-ribosyltransferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MDTPCKFSGA DVRGADFPPF TTVRRRRGRT STPADSSSFP DHFSSPASPP SSNFPTRLTL  60
FEVLGDLAEK LEFGGLTGDG KWSGKLLESA GVEALYGGER REIRTVKRCG RPHYILAAAL  120
LDRFLVLSAF PMALRFEVLA RFNRARAAQL TLPHFVCQTP LFMPVGTQGT IKGLATDQLE  180
EIGCQIILGN TYHLALRPTS ELIDDMGGLH KFMNWPRAML TDSGGFQMVS LLHLADITEK  240
GVTFQSPVDG KPMLLTPEES IQIQNRIGAD IIMALDDVVK TTITGPRIEE AMYRTLRWID  300
RCIAAHTRPN EQNLFGIVQG GLDPVLRDIC VRGLVERNLP GYAIGGLAGG ESKDSFWRVV  360
AQCTAALPED KPRYVMGVGY PLDIVVCSAL GADMYDCVYP TRTARFGTAL IPEGVLKLKH  420
KAMAKDTRPI DPTCACMVCK KYTRAYIHCL VTKDAMGSQL LSYHNLYYML KLSRDLHSSI  480
IQGTFPDFLK AMSRNGSAMP WRLRALTSLP VVLHFLHPKI RIRSVYTTER FSRSDSLGTL  540
IPNYPPKEEK HNTRNNGGYS KEFQAMLDSY DQEDCGEEIS VKKRRLSLHQ VKALEISFEV  600
ENKLEPERKV KLAEELGLEP RQVAIWFQNR RARWKTKQLE RDYSVLKADY DALKDNYDSL  660
ERQNKVLAEK LKELKAKLCR DNAESDQSVK EESPISVYKS SVMEQSRDQD LSDNGDNAGL  720
DSYKDLKSKD GSSDSESNGA VKEESNGNES SMGYNGHSLS SNSMMNWFQL SDSRSGIKGN  780
HQTQFVRMEE QSLFSTEESC NFFSVDQAPS LHW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6h42_A1e-1581315134392Queuine tRNA-ribosyltransferase catalytic subunit 1
6h42_B1e-1581315134392Queuine tRNA-ribosyltransferase catalytic subunit 1
6h45_A1e-1581315133391Queuine tRNA-ribosyltransferase catalytic subunit 1
6h45_B1e-1581315133391Queuine tRNA-ribosyltransferase catalytic subunit 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104108TVKRC
2629637RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11939.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_004160300.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.19e-45homeobox protein 16