PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12000.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 242aa    MW: 27532.8 Da    PI: 8.5781
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12000.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.91.2e-2019971399
                             TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                             s  + +p+ f+++++g+       +le ++g+ W+vkl  + k + +++ kGWk+Fvk+n L+egDf+vF +dg+s+f  +v+++++
  mrna12000.1-v1.0-hybrid 19 SEKMKIPRAFVNHFNGP----ALCQLEGPNGNCWDVKL--EEKNNDFFFHKGWKKFVKDNFLDEGDFLVFNYDGNSCF--KVTIYDE 97
                             4569*******777766....3579*************..99999*********************************..8888775 PP
2B340.93.8e-131452261198
                              HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                       B3  11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                              +++ +lv+p + a++   +    + + l l+d+++r W v++     +gr +  kGW++ +kan++k+g ++v+++++ + +  ++
  mrna12000.1-v1.0-hybrid 145 HRLYQLVIPITIARAKldM----GRQILELRDPKNRPWPVTV-APMEDGRLLVNKGWRDCCKANQVKVGHTIVLEFVK-KHG--KL 222
                              455679*******887532....3348***************.5667778*************************988.666..45 PP

                              EEE- CS
                       B3  95 kvfr 98 
                              ++fr
  mrna12000.1-v1.0-hybrid 223 HIFR 226
                              6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-234100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.395798IPR003340B3 DNA binding domain
CDDcd100171.77E-21896No hitNo description
SuperFamilySSF1019366.87E-248104IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-161098IPR003340B3 DNA binding domain
PfamPF023621.3E-181996IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-15131230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-14132230IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.461135230IPR003340B3 DNA binding domain
CDDcd100172.02E-10136226No hitNo description
SMARTSM010192.4E-7138228IPR003340B3 DNA binding domain
PfamPF023623.1E-11143226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MASSVPAPAF FTVLVGGFSE KMKIPRAFVN HFNGPALCQL EGPNGNCWDV KLEEKNNDFF  60
FHKGWKKFVK DNFLDEGDFL VFNYDGNSCF KVTIYDESAC EMDIEAAKTK RSGGAQRRDD  120
VPPGESRIIE FKSKHFCFKR TMERHRLYQL VIPITIARAK LDMGRQILEL RDPKNRPWPV  180
TVAPMEDGRL LVNKGWRDCC KANQVKVGHT IVLEFVKKHG KLHIFRDEGC DVILSGPHVV  240
D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12000.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305410.10.0PREDICTED: B3 domain-containing protein REM5-like
RefseqXP_011466851.10.0PREDICTED: B3 domain-containing protein REM5-like
RefseqXP_011466852.10.0PREDICTED: B3 domain-containing protein REM5-like
RefseqXP_011466853.10.0PREDICTED: B3 domain-containing protein REM5-like
RefseqXP_011466854.10.0PREDICTED: B3 domain-containing protein REM5-like
RefseqXP_011466855.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A2P6S8F21e-127A0A2P6S8F2_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004305410.11e-180(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.15e-21B3 family protein