PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12119.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 26061.4 Da    PI: 4.6218
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12119.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.7e-27857251
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             +ien   rqvtfskRr+g++KKA ELSvLCdaevavi+fsst+klye+s+
  mrna12119.1-v1.0-hybrid  8 KIENLPARQVTFSKRRKGLFKKAGELSVLCDAEVAVILFSSTDKLYEFST 57
                             79**********************************************96 PP
2K-box46.21.9e-1679169898
                    K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                              +++ ++ +  + e  +L+ e+ +  +++Rh+ G+dLe+L++ eLq+Le+ +e +l+++ ++K++ +++qi  l  k  el e+n+ 
  mrna12119.1-v1.0-hybrid  79 QQSPNELQLVTDECMRLNMELAEKNHKLRHMEGQDLEELKIDELQRLENMIEGGLSRVLQTKDQRIMSQILALETKGAELTEANNL 164
                              4566778888999999999999999************************************************************* PP

                    K-box  94 Lrkkl 98 
                              Lr++l
  mrna12119.1-v1.0-hybrid 165 LRQRL 169
                              **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-31158IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-23121IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.361159IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-27270IPR002100Transcription factor, MADS-box
CDDcd002654.81E-34373No hitNo description
PfamPF003198.6E-25855IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-232136IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-233657IPR002100Transcription factor, MADS-box
PfamPF014865.2E-1483169IPR002487Transcription factor, K-box
PROSITE profilePS5129711.04785175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MNKIRIEKIE NLPARQVTFS KRRKGLFKKA GELSVLCDAE VAVILFSSTD KLYEFSTSST  60
VDVIARFKLC TEDVEEGDQQ SPNELQLVTD ECMRLNMELA EKNHKLRHME GQDLEELKID  120
ELQRLENMIE GGLSRVLQTK DQRIMSQILA LETKGAELTE ANNLLRQRLG TLSNGDGNKA  180
SGVLSDPGIS TDEEDMRSGS CTIATSCFST GSSSSSMDDS SSEYTLSLKL GLLPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-15367569MEF2C
5f28_B7e-15367569MEF2C
5f28_C7e-15367569MEF2C
5f28_D7e-15367569MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12119.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299729.11e-170PREDICTED: MADS-box protein AGL24
RefseqXP_011464654.11e-170PREDICTED: MADS-box protein AGL24
RefseqXP_011464655.11e-170PREDICTED: MADS-box protein AGL24
RefseqXP_011464656.11e-170PREDICTED: MADS-box protein AGL24
TrEMBLA0A2P6PH101e-115A0A2P6PH10_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004299729.11e-170(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-53MIKC_MADS family protein