PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna12189.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

M-type_MADS

Protein Properties

Length: 228aa MW: 25397.5 Da PI: 8.8127

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna12189.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	28.4	2.2e-09	24	63	10	49
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 v+f+kRr++++ KA L+ ++++av+++s++gk y + mrna12189.1-v1.0-hybrid 24 DVSFCKRRKTVFSKALKLCGEHGTRIAVLVLSPRGKPYAF 63 79*********************************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0018	8	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-10	22	82	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.6E-9	22	63	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.867	25	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MGKRRPCTEE QKRERDVLAS KKGDVSFCKR RKTVFSKALK LCGEHGTRIA VLVLSPRGKP 60 YAFGHTSVDA VLNRSMSNKI KKYVQQSRAS VINEERNMVE RMKEGIENEL KACQTFFDTW 120 PCLNGGPTSG YGNYVVYNHA YYGKNNNGDD GSSWGFEYVE NIMPNSLSQR SEFDDGNYIR 180 GGHAYGNNSY GREESSWGTE CIENVGIGSD VHVLVVGLQR RATCPGV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna12189.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011464690.1	6e-79	PREDICTED: agamous-like MADS-box protein AGL61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-11	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	mrna12189.1-v1.0-hybrid