PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12224.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 1159aa    MW: 128472 Da    PI: 6.6639
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12224.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.44.9e-22134235199
                              EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                              f+k+lt sd++++g +++p++ ae++      +++++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v
  mrna12224.1-v1.0-hybrid 134 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfNMQPPA-QEIVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDAV 218
                              99*****************************9555544.49********************************************* PP

                              EEEE-SSSEE..EEEEE-S CS
                       B3  81 vFkldgrsefelvvkvfrk 99 
                              +F   ++++++l+++++r+
  mrna12224.1-v1.0-hybrid 219 LFI--RDEKQQLLLGIRRA 235
                              ***..5688889****997 PP
2Auxin_resp72.61.1e-24260319159
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl 59 
                              aahaa+++s+F+v+YnPras+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr+
  mrna12224.1-v1.0-hybrid 260 AAHAAANNSIFTVFYNPRASPSEFVIPLAKYYKAVCaNQLSLGMRFRMMFETEESGTRRF 319
                              79*******************************99779******************9998 PP
3Auxin_resp37.21.3e-133283644783
               Auxin_resp  47 mafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              ++fe+e  s  r++Gt++g+sdldpvrW+nS+Wr+L+
  mrna12224.1-v1.0-hybrid 328 FEFENEKLSFCRYMGTITGISDLDPVRWKNSQWRNLQ 364
                              689********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-43123263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-40125249IPR015300DNA-binding pseudobarrel domain
CDDcd100173.22E-18133225No hitNo description
PfamPF023625.0E-20134235IPR003340B3 DNA binding domain
PROSITE profilePS5086312.055134236IPR003340B3 DNA binding domain
SMARTSM010191.1E-21134236IPR003340B3 DNA binding domain
PfamPF065077.3E-20260319IPR010525Auxin response factor
PfamPF065073.7E-9327364IPR010525Auxin response factor
PfamPF023093.4E-610441130IPR033389AUX/IAA domain
PROSITE profilePS5174526.4210451129IPR000270PB1 domain
SuperFamilySSF542771.86E-610581123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1159 aa     Download sequence    Send to blast
MKQPANGGSA GVPALNSGEG GESVKIINPE LWQACAGPLV NLPPAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLPS KLLCLLHSVT LHADPETDEV YAQMTLQPVT SFDKEALLRS  120
DLALKSNKPQ PEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PSLDFNMQPP AQEIVARDLH  180
DTVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDAVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSIF TVFYNPRASP SEFVIPLAKY YKAVCANQLS  300
LGMRFRMMFE TEESGTRRFR FNGFDSNFEF ENEKLSFCRY MGTITGISDL DPVRWKNSQW  360
RNLQVGWDES TAGERRNRVS IWEIEPVTAP FFICPPPFFR SKRPRQPGMP DDESSDLDNI  420
FKRTMPWLGD DMCMKDPQVI PGLSLVQWMN MQQNSSVASS MQPNYMHPSF SGSVMPNLTG  480
VDLSRQMGLS APQLPQPNNL QFNAQRLPQQ VQQLDQLPKM QSTMNPLASM VQRQQQMGDM  540
TQVARQNLVN QSLPSSQAQS PLLQPQSPLL QPQSLAQANS ILQQQSSTQN QLQRNLPQNL  600
QQHQQQQQQH QQQQQQQQHH QQNVGQNQQQ NFIQTPLPDQ MNPQLQHLSD NQLQLQLLQK  660
LQQHQQSYLA QQALQQQPTQ LLQLQDQQRQ LLDVSQSFPR PSTPSEMQDM PLSAPISHPQ  720
SRTMPQQMTI YNNNQPNGRF SHLQPQSKLQ QQQPGILADM SGHMGLPPTG STNQLSRAGS  780
GMMAGVAGAG QSGLTDEGPS CSTSPSTNNC PTVVQPLTNN RAHRNSLTGE DMAQSANMVM  840
SSSALETMPS NGNLVKGFQH KSEVKPSVNI TRSQSQGMLN PHTYLNGVAA QTDYLDTSSS  900
TTSAGLSQND VHLQHNNTPL AFNPQSMLFR EPSQEVEAQV DQRNNVSYGS NIDSQLGIPL  960
SSDPLLEKGI VGIGKDITNN ITSGSMIGNF ENSKDAQQEL SSSMVSQSFG VPDMTFQSID  1020
STINDSSFLD GGAPWAPAAQ FQRMRTYTKV YKRGAVGRSI DITRYSGYDD LKHDLARRFG  1080
IEGQLEDRGR VGWKLVYVDH EKDVLLVGDD PWEEFVNCVR CIKILSPQEV QQMSLDGDFG  1140
GNTVLPNQAC SSSDGGNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601938543388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12224.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464700.10.0PREDICTED: auxin response factor 19-like
TrEMBLA0A2P6QS390.0A0A2P6QS39_ROSCH; Auxin response factor
STRINGXP_004301398.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19