PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12273.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 232aa    MW: 26444.1 Da    PI: 8.8136
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12273.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-1895149256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ ++tkeq++ Le+ F+++++++ +++  LA+ l+L+ rqV vWFqNrRa+ k
  mrna12273.1-v1.0-hybrid  95 RKKLRLTKEQTTLLEDSFKRHSTLNPNQKHALAELLNLKPRQVEVWFQNRRARTK 149
                              78889************************************************98 PP
2HD-ZIP_I/II118.73.2e-3895182188
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rl+keq +lLE+sF+++++L+p++K++la+ L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en++L+ke +e
  mrna12273.1-v1.0-hybrid  95 RKKLRLTKEQTTLLEDSFKRHSTLNPNQKHALAELLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKWCESLNAENRKLKKELQE 180
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lr 88 
                              L+
  mrna12273.1-v1.0-hybrid 181 LK 182
                              98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-1983152IPR009057Homeodomain-like
PROSITE profilePS5007117.10391151IPR001356Homeobox domain
SMARTSM003891.2E-1593155IPR001356Homeobox domain
PfamPF000461.2E-1595149IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.3E-1895154IPR009057Homeodomain-like
CDDcd000869.00E-1495152No hitNo description
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
SMARTSM003401.1E-15151196IPR003106Leucine zipper, homeobox-associated
PfamPF021831.9E-9151182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MADYDPEACN TRLQLGLGLG GYAPRQEMRN SKDRPLVCFD LSFTLLPKPE KIANLDHHMA  60
NRSSLTMNII DEDDEDRRST DRADSEITNF KDGARKKLRL TKEQTTLLED SFKRHSTLNP  120
NQKHALAELL NLKPRQVEVW FQNRRARTKL KQTEVDCEFL KKWCESLNAE NRKLKKELQE  180
LKLLSVNGAS SPLLTHQIPK TTMLTMCSSC ERKAKANEQY PNNEAAAAAT N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143151RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12273.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299785.11e-171PREDICTED: homeobox-leucine zipper protein HAT14-like
SwissprotP466658e-52HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2P6QSD01e-143A0A2P6QSD0_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004299785.11e-171(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-43HD-ZIP family protein