PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12431.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 201aa    MW: 22854.8 Da    PI: 6.5876
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12431.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.8e-11671441796
                              E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                       B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                               lp   ++++g++      + l+   + + W+vkl+ + ++++++l+kGWk F +   L+eg+ +vF + g+ s f  +v++
  mrna12431.1-v1.0-hybrid  67 ELPAVAVKKYGHQMGD--HIFLKVpNWEEPWKVKLSKSPCGNHMWLEKGWKAFTQFYLLEEGELLVFNYYGEhSHF--RVRI 144
                              5777788888877555..5777765688*******77777777*************************99976777..6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.51651148IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-1365147IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-1267146IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-968144IPR003340B3 DNA binding domain
CDDcd100175.90E-1468145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MHHYSKASTN LNLAICAVKR FWQKAVASAI EVEEQGHMKS VHDRESAYRV EKNTELVSSR  60
KDKSLEELPA VAVKKYGHQM GDHIFLKVPN WEEPWKVKLS KSPCGNHMWL EKGWKAFTQF  120
YLLEEGELLV FNYYGEHSHF RVRIIGWDDM EIHYPSPGNE VRAVIISSGS SGDEQELEAR  180
LIAISSGSSG DEHEIEARAK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12431.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470668.16e-90PREDICTED: B3 domain-containing protein At1g49475-like
TrEMBLA0A2P6SMG53e-67A0A2P6SMG5_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004309106.13e-84(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.15e-10B3 family protein