PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12744.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 249aa    MW: 28066 Da    PI: 10.4138
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12744.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.7e-12791393792
                              EEEETTS-EEEEEE...EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                       B3  37 tledesgrsWevkliy.rkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                              +++ +  ++W+++++  +++ gr   ++ ++GWk F ++n+L+egD++v++++++  ++++
  mrna12744.1-v1.0-hybrid  79 SVNIQGDKVWTIQCCSyKRSNGRmqaIIAGAGWKAFRQDNHLEEGDICVLEVIEEpAGTTP 139
                              45556679******6643333335669999*********************9988555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100179.46E-861129No hitNo description
PfamPF023621.6E-979140IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-882133IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-882133IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDEMSSRPRP ATDSSPDSED RVRRRRRRQI GFEAEARAIS VSPRCLADEH EYDTSQMSSF  60
RSDKPFLDIR IPAKIMSFSV NIQGDKVWTI QCCSYKRSNG RMQAIIAGAG WKAFRQDNHL  120
EEGDICVLEV IEEPAGTTPT IINRTLRVNK SVRKLKKFFS SFPTKQKGHP SKFGTSTACT  180
PNRDRKGKRP AVPEDSPFLC VRLLELDDIK EGRKGPIRNG RKCQPKRNPH KAFLASHADI  240
PVELPSLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12027RVRRRRRR
22227RRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12744.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4558346e-53HQ455834.1 Rosa multiflora breeding line 88/124-46 black spot resistance muRdr1 gene locus, complete sequence.
GenBankJQ7915456e-53JQ791545.1 Rosa rugosa Rdr1 homologous region genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307939.12e-60PREDICTED: B3 domain-containing transcription factor VRN1-like
RefseqXP_011470193.12e-60PREDICTED: B3 domain-containing transcription factor VRN1-like
RefseqXP_011470194.12e-60PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2P6SP923e-49A0A2P6SP92_ROSCH; Putative transcription factor B3-Domain family
TrEMBLJ7G0R31e-48J7G0R3_ROSRU; Transcription factor
STRINGXP_004307939.16e-60(Fragaria vesca)