PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12765.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 229aa    MW: 26556.6 Da    PI: 5.4815
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12765.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.2e-192677556
                             SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             ++f++eq++ Le+ Fe ++++  +++ + A++lgL+ rqV +WFqNrRa++k
  mrna12765.1-v1.0-hybrid 26 RRFSDEQIKLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWK 77
                             48*************************************************9 PP
2HD-ZIP_I/II120.68.1e-3924115293
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              + rr+s+eq+klLE+ Fe+++kLep+rKv++areLglqprqva+WFqnrRAR+k+kq+E+d+++L+++yd l+++ e+L++e+++L
  mrna12765.1-v1.0-hybrid  24 NSRRFSDEQIKLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRNEYDLLASKFESLKEEKQSL 109
                              579*********************************************************************************** PP

              HD-ZIP_I/II  88 reelke 93 
                                +l++
  mrna12765.1-v1.0-hybrid 110 LIQLEK 115
                              998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.76E-181680IPR009057Homeodomain-like
PROSITE profilePS5007117.3621979IPR001356Homeobox domain
SMARTSM003896.4E-182283IPR001356Homeobox domain
CDDcd000862.86E-152380No hitNo description
Gene3DG3DSA:1.10.10.602.4E-192685IPR009057Homeodomain-like
PfamPF000462.2E-162677IPR001356Homeobox domain
PRINTSPR000311.3E-55059IPR000047Helix-turn-helix motif
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PRINTSPR000311.3E-55975IPR000047Helix-turn-helix motif
PfamPF021831.1E-1279120IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEREAEILET HTSAKRKKNN KSQNSRRFSD EQIKLLESIF EADSKLEPRR KVQVARELGL  60
QPRQVAIWFQ NRRARWKSKQ IEQDFRTLRN EYDLLASKFE SLKEEKQSLL IQLEKLNDLM  120
GKPKDHDEKL NDLMGKPKDH DADTDGKDLE GSSSKDGNCE TTEEKPSHLQ SHKNIASNDV  180
GDEGQDQLMN MCQVEAIPED WNRFDSGCLF DPLRSSSATS QWFNFWIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17179RRARWKSKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12765.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0586631e-163KP058663.1 Rosa hybrid cultivar homeobox-leucine zipper protein 2 (HB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307928.11e-168PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotP468975e-41ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLJ7FWS71e-132J7FWS7_ROSRU; Homeobox leucine zipper
STRINGXP_004307928.11e-168(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.13e-42homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]