PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13212.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 677aa    MW: 73758.6 Da    PI: 7.302
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13212.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.51.8e-1053096762374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              ++ L+e+A a+s+g+ e+a ++L+rl +  sp  ++ qRl  +++ AL++r++      ++     + +   ++e++ ++++++e+
  mrna13212.1-v1.0-hybrid 309 KQSLMEAASAISEGKSEAAAEILTRLTQVTSPIPNSEQRLLEFMASALKSRVNP-----ADNP--PPVKALFTQEHAGSTQFLYEL 387
                              578**************************************************9.....3333..3333234899999******** PP

                     GRAS  88 sPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakf 168
                               P++ +++++aN aIlea+  +    ++vH+iDfdi+qG+Q++ LlqaL+ R++g+p  ++iT+v++ + g +e+l++++e+L+++
  mrna13212.1-v1.0-hybrid 388 LPCYGLGFMAANLAILEATLADqsttNKVHVIDFDIGQGGQYMHLLQALSRRQNGKPsAVKITTVAD-NGGGEERLRTVRENLNQV 472
                              ******************8655557799*************************887769********.556*************** PP

                     GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                              A+el+v +efnv v ++l++l+ e+L ++p+E +aVn++++l++++desvs++++rde+L+ vk+l P+vv++veqe+++n+++F+
  mrna13212.1-v1.0-hybrid 473 AKELRVGLEFNV-VGHKLSELNRESLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQELNTNTAPFM 557
                              ***********9.799********************************************************************** PP

                     GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                              +r+ e++ yy al++s+ea  ++++ +r+k E++ l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  ++s++++++ k+l
  mrna13212.1-v1.0-hybrid 558 ARVNECCAYYGALLESIEAV-AKDHPDRAKAEEA-LSRKLANSVACEGRDRVERCEVFGKWRARMGMAGFELRAMSQSVTESLKRL 641
                              *****************998.799**********.*************************************************** PP

                     GRAS 341 lrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +    + g++v+e++g++++gW +r+L+++SaWr
  mrna13212.1-v1.0-hybrid 642 SSGKCvNPGFTVKEQNGAVCFGWISRTLTVASAWR 676
                              9877769***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.261282655IPR005202Transcription factor GRAS
PfamPF035146.2E-103309676IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MQSGFNSGGG AGGLPEFYTG GGARSIGNTM NNHPSQPQYH HRSQLPGLFM DSTVSQIGTR  60
QTQNPHNSTA GLIGKRTLAE FQFHQQNPYQ QNLTNQQNMY LRSLKPRTAA NFQQSFQHSS  120
PISPLSPIDF SLASSYTGSD NSSSSTTSSM LSQRSGFAPL LQQLRPQPIS SPTFQASSLP  180
YRSNNNCIRS FQNQSSVQNR VSVSMESEKK MINPVVSVSA PVSSVDSEKK MIDHRLQELE  240
KQLLDDNDEE EEAGDGVSVI TKTNSEWSET IQNLFGPNPK TQKPVSPSPT SSSSSSSSVA  300
SPATLTCSKQ SLMEAASAIS EGKSEAAAEI LTRLTQVTSP IPNSEQRLLE FMASALKSRV  360
NPADNPPPVK ALFTQEHAGS TQFLYELLPC YGLGFMAANL AILEATLADQ STTNKVHVID  420
FDIGQGGQYM HLLQALSRRQ NGKPSAVKIT TVADNGGGEE RLRTVRENLN QVAKELRVGL  480
EFNVVGHKLS ELNRESLGCE PDEPIAVNFA FKLYSMPDES VSTDNPRDEL LRRVKGLAPR  540
VVTLVEQELN TNTAPFMARV NECCAYYGAL LESIEAVAKD HPDRAKAEEA LSRKLANSVA  600
CEGRDRVERC EVFGKWRARM GMAGFELRAM SQSVTESLKR LSSGKCVNPG FTVKEQNGAV  660
CFGWISRTLT VASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-393106766375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13212.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1803070.0DQ180307.1 Fragaria x ananassa clone PBCESTFXA2 SSR marker.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470326.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-166SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A2P6SNC40.0A0A2P6SNC4_ROSCH; Putative transcription factor GRAS family
STRINGXP_004308059.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-156SCARECROW-like 8