PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna13306.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HD-ZIP

Protein Properties

Length: 928aa MW: 102128 Da PI: 6.8124

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna13306.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.9	1.3e-21	112	167	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r +L+++lgL+++qVk+WFqNrR+++k mrna13306.1-v1.0-hybrid 112 KKKYHRHTPSQIQELESFFKECPHPDEKQRSDLSRRLGLETKQVKFWFQNRRTQMK 167 79999************************************************999 PP
2	START	172.9	2e-54	323	539	1	204
HHHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS START 1 elaeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWde 74 ela ea++elv++a+a++p+W+kss e ++++ + + ++a+r+s +v+ +++ lve+++d + +W+ mrna13306.1-v1.0-hybrid 323 ELAGEAMDELVRMAQADSPLWMKSSdggtetlNVELYKTSSCI-----StrqsgLVTDASRDSCMVIINSMALVETMMDAN-RWTD 402 5799*******************886533322222222222.....2445569**********************. PP T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESS CS START 75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellp 149 +++ +a+t+ issg g++q m aelq+lsplvp R f+R+++ql +g+w++vdvSvd q+ + ++ +++lp mrna13306.1-v1.0-hybrid 403 MFPtlvsRASTIGIISSGpsgtrnGTIQMMLAELQMLSPLVPvRPLKFLRFSKQLAEGVWAVVDVSVDIHQDAS----SMNCRRLP 484 ********************************************************************87....699999 PP EEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 150 Sgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 Sg+++++++ng+skvtw+eh +++++ +h+ll++l++sg+ +ga++w+ tlqr c mrna13306.1-v1.0-hybrid 485 SGFIVQDVPNGYSKVTWIEHSEYNESGVHQLLQPLLRSGIGFGAQRWLTTLQREC 539 *****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-22	98	169	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.05E-20	100	169	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.912	109	169	IPR001356	Homeobox domain
SMART	SM00389	4.0E-19	111	173	IPR001356	Homeobox domain
CDD	cd00086	1.94E-19	112	169	No hit	No description
Pfam	PF00046	3.6E-19	112	167	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	144	167	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	40.8	314	544	IPR002913	START domain
SuperFamily	SSF55961	3.3E-28	318	541	No hit	No description
CDD	cd08875	3.12E-96	322	539	No hit	No description
SMART	SM00234	5.5E-41	323	541	IPR002913	START domain
Pfam	PF01852	4.9E-47	323	539	IPR002913	START domain
SuperFamily	SSF55961	8.63E-15	569	787	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 928 aa Download sequence Send to blast
MNFGGSVSDS GGVGGSRVVA EIDPHSSGGA IAQPHFTPNS MQSSSALSLS IVQQNMDGHG 60 DLDLIAESFD PGIIGRLRED EFEQSRSGSE HFDGASGDDQ DPADEDDHPR RKKKYHRHTP 120 SQIQELESFF KECPHPDEKQ RSDLSRRLGL ETKQVKFWFQ NRRTQMKTQL ERHENIILRQ 180 ENDKLRAENG VMKDAMSNPI CHNCGGPAIP GQISFDEHQL RIENARLNDE LSRICTLAQK 240 FLGRPISNLA APPSLPSSTA GLDLAMGING MGGLHAGSSH RLSMGFELGD GVGSSSPMMP 300 LTKPAIGMPN ELQHLNDRHV YLELAGEAMD ELVRMAQADS PLWMKSSDGG TETLNVELYK 360 TSSCISTRQS GLVTDASRDS CMVIINSMAL VETMMDANRW TDMFPTLVSR ASTIGIISSG 420 PSGTRNGTIQ MMLAELQMLS PLVPVRPLKF LRFSKQLAEG VWAVVDVSVD IHQDASSMNC 480 RRLPSGFIVQ DVPNGYSKVT WIEHSEYNES GVHQLLQPLL RSGIGFGAQR WLTTLQRECD 540 ALSFLMSSAN PNEVPRGLSM NSKKSMLRLA QRMMQSFCSG VCGSLVHQWD KLCIDNVSDN 600 VRVMVRQSLE VGEPSGFVLS AATSVWMPVS RSRLFDFLRN WQLRGQWDIL VGCRPLQAMV 660 QIDKDHEGGN SVSLFNAKGL DASNNNNMLM FQETMTDASG SIIVYAPITS TSSDIMRDVV 720 YEGGDSTYVE LLPSGFAILP CVTSEYVKEE GNGSDEGGCL LTVGFQIVCD GGQPTSKLTM 780 HSVRIVVTDR KLQVSNINWS TIPLGTMLNV HNFQKPKQEK VLDYNLSLRR GKSLRKTDWR 840 RSSNVITTMQ SSGRACATHP SISAVHFEKV KSPRQMDGGD GRKRMRMIPT MLTDLLPFNG 900 PLRQALRSTA HPPSPNSLRA ARDLSLL*

Sequence ? help Back to Top

Protein Sequence Length: 928 aa Download sequence Send to blast

MNFGGSVSDS GGVGGSRVVA EIDPHSSGGA IAQPHFTPNS MQSSSALSLS IVQQNMDGHG  60
DLDLIAESFD PGIIGRLRED EFEQSRSGSE HFDGASGDDQ DPADEDDHPR RKKKYHRHTP  120
SQIQELESFF KECPHPDEKQ RSDLSRRLGL ETKQVKFWFQ NRRTQMKTQL ERHENIILRQ  180
ENDKLRAENG VMKDAMSNPI CHNCGGPAIP GQISFDEHQL RIENARLNDE LSRICTLAQK  240
FLGRPISNLA APPSLPSSTA GLDLAMGING MGGLHAGSSH RLSMGFELGD GVGSSSPMMP  300
LTKPAIGMPN ELQHLNDRHV YLELAGEAMD ELVRMAQADS PLWMKSSDGG TETLNVELYK  360
TSSCISTRQS GLVTDASRDS CMVIINSMAL VETMMDANRW TDMFPTLVSR ASTIGIISSG  420
PSGTRNGTIQ MMLAELQMLS PLVPVRPLKF LRFSKQLAEG VWAVVDVSVD IHQDASSMNC  480
RRLPSGFIVQ DVPNGYSKVT WIEHSEYNES GVHQLLQPLL RSGIGFGAQR WLTTLQRECD  540
ALSFLMSSAN PNEVPRGLSM NSKKSMLRLA QRMMQSFCSG VCGSLVHQWD KLCIDNVSDN  600
VRVMVRQSLE VGEPSGFVLS AATSVWMPVS RSRLFDFLRN WQLRGQWDIL VGCRPLQAMV  660
QIDKDHEGGN SVSLFNAKGL DASNNNNMLM FQETMTDASG SIIVYAPITS TSSDIMRDVV  720
YEGGDSTYVE LLPSGFAILP CVTSEYVKEE GNGSDEGGCL LTVGFQIVCD GGQPTSKLTM  780
HSVRIVVTDR KLQVSNINWS TIPLGTMLNV HNFQKPKQEK VLDYNLSLRR GKSLRKTDWR  840
RSSNVITTMQ SSGRACATHP SISAVHFEKV KSPRQMDGGD GRKRMRMIPT MLTDLLPFNG  900
PLRQALRSTA HPPSPNSLRA ARDLSLL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna13306.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004309219.2	0.0	PREDICTED: homeobox-leucine zipper protein HDG1 isoform X1
Swissprot	Q9M2E8	0.0	HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBL	A0A2P6SMY1	0.0	A0A2P6SMY1_ROSCH; Putative transcription factor & lipid binding Homobox-WOX family
STRING	XP_004309219.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	mrna13306.1-v1.0-hybrid

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Horstman A, et al. AIL and HDG proteins act antagonistically to control cell proliferation. Development, 2015. 142(3): p. 454-64 [PMID:25564655]