PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13309.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 1424aa    MW: 160021 Da    PI: 8.2443
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13309.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.52.2e-23242327288
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                              +Yn+YAk vGFsvrk+  ++sk +g++++r+f+Cskeg+r+++k+  ++ +++r+etrtgC a++ ++++ d k++++++e++HnH
  mrna13309.1-v1.0-hybrid 242 CYNKYAKLVGFSVRKDWVNRSKVHGQVVSRKFTCSKEGYRRRDKRV-VNVKKHRKETRTGCLAHMIITRQPDFKYRISHIEEQHNH 326
                              7*****************************************9988.999************************************ PP

                     FAR1  88 e 88 
                              e
  mrna13309.1-v1.0-hybrid 327 E 327
                              8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF476996.02E-1136100IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
SMARTSM004992.2E-73897IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
CDDcd046601.79E-113897No hitNo description
PfamPF031016.1E-21242327IPR004330FAR1 DNA binding domain
PfamPF105511.7E-10471519IPR018289MULE transposase domain
SMARTSM000150.002710651087IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.68810661094IPR000048IQ motif, EF-hand binding site
PfamPF006121.9E-410691087IPR000048IQ motif, EF-hand binding site
SMARTSM000153310881109IPR000048IQ motif, EF-hand binding site
PfamPF006120.02710901107IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.87110901117IPR000048IQ motif, EF-hand binding site
PfamPF131781.3E-1113281380IPR025064Domain of unknown function DUF4005
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1424 aa     Download sequence    Send to blast
MANFKSMISF QTAALLLVVM IGLALVENQI AEAQGGSCMA DLTHLNVCAP FVLPGSDNKP  60
SSDCCSAIQA METTCLCNTL RIAAQIPTQC NLPPLSCGIV IGIGNRNPNR TVKAWTLKHT  120
LNLKGGVFTQ YRKECGLLLL LDIGLVTDFQ CFLQCLMQCS CYYEGSMERE EGHLISIIDE  180
TIDFGVETNN SLDLNVEQDC TNSQIVHENG TLSNISSTND HSIDAVVKVG TEFESDEHAY  240
SCYNKYAKLV GFSVRKDWVN RSKVHGQVVS RKFTCSKEGY RRRDKRVVNV KKHRKETRTG  300
CLAHMIITRQ PDFKYRISHI EEQHNHENVN PSMAQALPPQ RESSISQAAD AELVEGTKDF  360
RTLSKFASES VNKQFRLSEA LDNVNIGYAN HLQSERTRDM KKGEVGSLLH YFQRHHVENP  420
SFFYALQVDS DDKVCNIFWA DDKMVSDYDH FGDVVCLDTV CRTGKNCLPF WLFQTFLEAM  480
SGKKPKTILT DQDATIVEAI NSVLSETDHH ICIWQMYENA LKHISPMVKD TESFANDFKR  540
CIYEHKDEDD FVSAWRDMLD NYDLHQNDWL KWMFRAREKW AVVYGWNTIF VEMEGGHLVE  600
SLFNDLRNYL HSDTTVLQFF KHFERVVDEQ RSKEREASDE MNRCLPRLMG NVVMLKHASN  660
EYTPRAFEVL QQGYEKCLNV VVNQCSQNGS LFDHALKVLD HRNIRVLPAK YVLKRWTKDA  720
RSGRARLSDV STVHDNPKLT VASRYKDLSH RILMLSTRAS ESGEAFQYAV RQLDQVLEGV  780
EKILTLKPGD AQAVTSSITG TTTFDIEYAE NFLDENAFVN QGENGVKGEN EQGSGVLDRG  840
EFTNADGNFS STDRNQISDS SPQSNHSFIS PEAFTGNPIA QGLYTFEASP ANNCMYAQAN  900
ATLLQPPNIF PNQHDSPSLL QLFQEPLING TYQEPVSEPR QNALQIFLFH QLTSVAPHLP  960
TAPKRLVARV GNSQPSAREM GFFRRLFGPK KPKKKTNKAD ASTSASQEWG GMDANKHAIA  1020
VAAATAAVAE AALAAAHAAA EVVRLTNGVG TSGNNVSLPV NVRRHRNLAA VKIQSAFRRY  1080
LARRALRALK ALVKLQALVR GHIVRKQTAD MLKRMQTLVR LQDRARATRS LMSESVHSSS  1140
KSSLSYNPLP ESPDKIGYQQ RVYSSKFDGP SLLKRCGSNS KVRNTTSLDR RRLASSGWLD  1200
RWMEESVWNN SRDASSLRYV QADSEKVDKI LEVDTWKPHL GSQRNARAFQ TAQHVMVSDN  1260
NSPLFMTFDS PSKRTTKEPS LIPSQSSMDY YSSNSLKYPI GKDEVVASRT AENSPQAFSA  1320
SSRPGSRSAR RAHFSPTRSE YSWGFFSSYA GYPSYMANTE SSRAKVRSQS APRQRLEFEK  1380
YSLTKKSIQE FCEAGTCSET GLAQDADFRT KAFLSSSHSN RIR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1983994RRLFGPKKPKKK
2984992RLFGPKKPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13309.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024168656.10.0protein FAR1-RELATED SEQUENCE 12-like
TrEMBLA0A2P6SN050.0A0A2P6SN05_ROSCH; Putative transcription factor FAR family
STRINGXP_008234281.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-66FAR1-related sequence 5