PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna13324.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 146aa MW: 16298.5 Da PI: 6.6549

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna13324.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.5	1.2e-39	5	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee...redamsslvyeAearardPvyGavgvilkl 83 +CaaCk+lr++C++dC++apyfp+++p++f+nvh+++Ga+nv +lk+l++ + r +a+++l+yeAe r+++PvyG++++i++l mrna13324.1-v1.0-hybrid 5 RCAACKYLRKACPEDCIFAPYFPSNNPQRFENVHRIYGAKNVATMLKELEPLQpylRAQAVETLCYEAESRIQNPVYGCAAIIFHL 90 6**********************************************66554559************************* PP DUF260 84 qqqleqlkaelallkee 100 qqq+++ ++ela+l++e mrna13324.1-v1.0-hybrid 91 QQQIHNIESELAKLRAE 107 **********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.443	4	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-38	5	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MVMGRCAACK YLRKACPEDC IFAPYFPSNN PQRFENVHRI YGAKNVATML KELEPLQPYL 60 RAQAVETLCY EAESRIQNPV YGCAAIIFHL QQQIHNIESE LAKLRAEIAI LSSNGHGQAS 120 EIQLSTDQVH EDQSGSSSKA PNWFI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-33	6	108	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-33	6	108	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna13324.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004309226.1	1e-106	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	7e-42	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A2P6SMZ9	2e-77	A0A2P6SMZ9_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004309226.1	1e-105	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-44	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	mrna13324.1-v1.0-hybrid