PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13325.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARR-B
Protein Properties Length: 873aa    MW: 95996 Da    PI: 5.9993
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13325.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.71.3e-23184237155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k++++W++ LH++F+ a++++ G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  mrna13325.1-v1.0-hybrid 184 KAKVVWSNALHNHFLLAIKHI-GLDKAVPKRILEFMNVPGLTRENVASHLQKYRM 237
                              6799*****************.********************************7 PP
2Response_reg549.7e-1948626107
                              EEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
             Response_reg  26 vaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                              v ++ ++ +al +l++ +  +Dl+++D+ mp+m+Glel k  + e  +lp+i+++a ++e+ +l+ l+ G   +++Kp+++e++
  mrna13325.1-v1.0-hybrid   4 VVTVPNPMDALSILRKGKcsFDLVVTDLHMPQMNGLELQKLVHDEF-ELPVIMMSADDKESVILKSLEGGSVHYIVKPVSREDI 86 
                              67899*************9***********************9999.9********************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011030.079194IPR001789Signal transduction response regulator, receiver domain
SMARTSM004480.0058290IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.11E-17494No hitNo description
PfamPF000724.0E-15487IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521729.96E-224105IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.6E-224101No hitNo description
SuperFamilySSF466892.87E-17182241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-24182241IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-24184237IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MIPVVTVPNP MDALSILRKG KCSFDLVVTD LHMPQMNGLE LQKLVHDEFE LPVIMMSADD  60
KESVILKSLE GGSVHYIVKP VSREDIQMVW KCVLQSRKSR SSSVTLEEIM DVGASGEFAS  120
GQLLRGPGEL EDLDCISINN DVKYKDDHKK GQSGKKKMRK RDRNMDDEED DDGEHDRRLL  180
ARKKAKVVWS NALHNHFLLA IKHIGLDKAV PKRILEFMNV PGLTRENVAS HLQKYRMFLK  240
RVAEKARLSK CLSERIFRSS LEFGLPSTAS FNHVQREQYA EYLKQQLQMN EMGLVPPLQN  300
TLATLGTAHL GSSSFQYPMN YNQQSAALNL ASNDPQCHQL FGSGQSRLLM NNTLQQQRSM  360
QLGNGMNMFS QANHGSGFGM QMMNNNDGSM GGYGSLMNNG GNGLMNGGTN WMETYSQQSQ  420
AKQLQKALNF TSNPFNFGNT PRVSSPSIDN LMSPMNNANR GPSFGGIISQ PARGFDNIIN  480
GGYNGLAINN EVVNGITNGV RNVNLYGTNC NAPTLGNFGS NVSSSRFETS TANPIAPSFP  540
RNIQQQQNAS LSLSPNGMQP NRYGRSSTSG CGNNDFSFSA LTNNSTRNFN ISLANDDDDM  600
MVINNLVLQQ LENCQPPSHQ KQGGEEVPVN LTSMLYQDKV PAPNPTIDAQ VQMNTNHAAY  660
GLVQQTPNHV ANSQVQLNPN PSVNGEVHQL NVANPLSNDR VQLTPNPFVN GQDQQNPNLN  720
EISQFELNPS PTPTVHSQVK LNSAVNYEAQ LNPIRFLNIL NSNPAADRHL DLNPTANQVE  780
NPNMSSSSAS NSQLGELNPT ANQVGNPDFF GLGSYHKEDN AADDEQSWSL GEQGGNQQML  840
NSEFTSNMFQ SDDYSSLLDQ QFASQASQGL EL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-21181243264ARR10-B
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177186RLLARKKAKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13325.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309227.10.0PREDICTED: two-component response regulator ARR2-like
TrEMBLA0A2P6SMY40.0A0A2P6SMY4_ROSCH; Putative response regulator and transcription factor RR-A-type family
STRINGXP_004309227.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-44response regulator 2