PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13358.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17202 Da    PI: 11.7804
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13358.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.42.2e-24955147
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                             krienk+nrqvtfskRr g++ KA+ELSv Cda+va+i+ s  gkl+
  mrna13358.1-v1.0-hybrid  9 KRIENKINRQVTFSKRRLGLFRKAQELSVFCDAQVALIVSSRCGKLF 55
                             79*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-28160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-23171IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.857161IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-22323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-211055IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-223859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MGRGEVVMKR IENKINRQVT FSKRRLGLFR KAQELSVFCD AQVALIVSSR CGKLFDVFAS  60
SPSTNEPNVE RTCALHRFKM RTSLRSPPSN ADDGAPSLRR TPAASPITFP PRRVLRIPIS  120
GKIDFFEVLG DLAGKLEKKR TTRGGKVVRN AAGVF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}.
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1. {ECO:0000269|PubMed:10765981}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13358.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1851232e-55HQ185123.1 Fragaria vesca clone VT_863_R T-DNA insertion flanking sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6R4R62e-23CALD_BRAOB; Truncated transcription factor CAULIFLOWER D
SwissprotQ6R4R92e-23CALA_BRAOB; Truncated transcription factor CAULIFLOWER A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.11e-24MIKC_MADS family protein
Publications ? help Back to Top
  1. Li XF,Shen RJ,Liu PL,Tang ZC,He YK
    Molecular characters and morphological genetics of CAL gene in Chinese cabbage.
    Cell Res., 2000. 10(1): p. 29-38
    [PMID:10765981]