PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13480.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 200aa    MW: 22489.2 Da    PI: 8.0882
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13480.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-0964104954
                              HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                               r RR+ri ++f  L++l+P  +      K++ +++Le+A++Y+k L
  mrna13480.1-v1.0-hybrid  64 ARERRHRISERFKILQSLVPGgN------KMDTVSMLEEAIQYVKFL 104
                              699*****************955......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.47855104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-1560115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.60E-1361109No hitNo description
Gene3DG3DSA:4.10.280.101.2E-1261112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1361110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-764104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEYYFPAISD GSNFSSSSVI TNTNNMNING GGYKDRMKKG ASDHDQKVKS SKVKLSTDPQ  60
SVAARERRHR ISERFKILQS LVPGGNKMDT VSMLEEAIQY VKFLKNQIRL HQTMINFARD  120
DACHQYYDHD AATGNVFQLP IHHGHPVNRP QQQALCYEQN NFVGTSSSVQ PSVPVMPDYS  180
CFQGQEAAPE IDAYLKYYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13480.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468442.11e-130PREDICTED: transcription factor LAX PANICLE-like
TrEMBLA0A2P6R8X91e-91A0A2P6R8X9_ROSCH; Putative adenylylsulfatase transcription factor bHLH family
STRINGXP_008388859.13e-51(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.16e-29APRATAXIN-like