PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13705.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 354aa    MW: 39595.9 Da    PI: 7.035
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13705.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-13209255354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h+++Er+RR+++N++f  Lr+++P+       K++Ka+ L  A+ YI+sL
  mrna13705.1-v1.0-hybrid 209 VNHSKAERQRRAKLNHRFYALRSVVPNV-----SKMDKASLLSDAIVYINSL 255
                              68*************************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.7E-14102153IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.939206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-17208271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-11209255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.84E-14209260No hitNo description
Gene3DG3DSA:4.10.280.109.8E-18210268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-15212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEACSSQPHN LFQETSAATV FQQRLQFILQ NRPGYWVYSI FWQASTDGNN AVSFSWAGFD  60
LDITEKRINK ELEALFHEDM DMDVGLFNIN GDVTDRSGDH GLRFYECERV NMARMHGIQT  120
LVCIATPNGV LELASLEVIK EDWGFVQLSK SIFGSDIITT GAGSLNSMQG HLHVPQLQNV  180
HSGSIQARSG PHKRERPDKH VNAWQESSVN HSKAERQRRA KLNHRFYALR SVVPNVSKMD  240
KASLLSDAIV YINSLKTKIE ELEAKIQARP MKPKASIISD SVLDSQSNNS KTYASATAME  300
VDVKILGDLE LKIHHASISS VNQLMLQDVV VRVPDGFASE KHLCCLKFKR PDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-20205265363Transcription factor MYC2
5gnj_B2e-20205265363Transcription factor MYC2
5gnj_E2e-20205265363Transcription factor MYC2
5gnj_F2e-20205265363Transcription factor MYC2
5gnj_G2e-20205265363Transcription factor MYC2
5gnj_I2e-20205265363Transcription factor MYC2
5gnj_M2e-20205265363Transcription factor MYC2
5gnj_N2e-20205265363Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13705.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024171783.11e-155transcription factor MYC2-like
TrEMBLA0A2P6PAN11e-154A0A2P6PAN1_ROSCH; Putative transcription factor bHLH family
STRINGXP_004301652.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-43bHLH family protein