PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna13743.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

G2-like

Protein Properties

Length: 156aa MW: 17140.7 Da PI: 5.5914

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna13743.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	31.2	5e-10	1	20	36	55
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+vk+Ltl+hvkSHLQ+YR+ mrna13743.1-v1.0-hybrid 1 MDVKDLTLAHVKSHLQMYRT 20 9******************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-8	1	20	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MDVKDLTLAH VKSHLQMYRT VKTTDKAAAT SGQSELYENA SSGDTTEDIM FDNISQNPTR 60 SSEQGRPNNA QDKEYYGGLW SNSSSREAWL HGNKPKDDSA GNMPSLLDHE KDMMDPKGLR 120 NSYERISDVS SSTNHSGTSP VKPNLEFTLG RGQVN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna13743.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011465120.1	1e-109	PREDICTED: probable transcription factor KAN2 isoform X1
Swissprot	Q9C616	2e-30	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A2P6PAJ9	3e-80	A0A2P6PAJ9_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004300205.1	8e-88	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5968	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	9e-33	G2-like family protein

Link Out ? help Back to Top
Phytozome	mrna13743.1-v1.0-hybrid

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]