PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13751.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 793aa    MW: 87950.4 Da    PI: 5.8937
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13751.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.8e-2179134156
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              +++ +++t++q++e+e+lF+++++p+ ++r++L+  lgL+ rqVk+WFqNrR+++k
  mrna13751.1-v1.0-hybrid  79 KKRYHRHTAHQIQEMENLFKECPHPDDKQRQKLSLDLGLKPRQVKFWFQNRRTQMK 134
                              688999***********************************************998 PP
2START161.46.9e-512825063206
                              HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
                    START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdet 75 
                              a + ++elvk+ +a+ep+W+k s  eng+e l  +e+++               ++ea r+++vv+m++ +lv  +ld + +W e 
  mrna13751.1-v1.0-hybrid 282 AASSLEELVKMCTAGEPLWMKNS--ENGMEMLNAEERARLfpwpmnfkqnssdLRTEATRDTAVVIMNSINLVDAFLDAN-KWMEL 364
                              678899*****************..99999999999988899999***********************************.***** PP

                              -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESS CS
                    START  76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellp 149
                              ++    ka+t++vis +      g lqlm+aelq+ splvp R+  f+Ry+ q +++g+w+ivd  +ds      ++s+ R ++ p
  mrna13751.1-v1.0-hybrid 365 FPsivsKAKTVQVISADpsgqanGSLQLMYAELQVVSPLVPtRETHFLRYCHQnEEEGSWAIVDFPIDSFHGSF-QPSFPRYKRWP 449
                              ********************************************************************999987.9********** PP

                              EEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 150 Sgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              Sg+li++++ng+s++twveh++ +++ +h+++ +   sgla+ga +w+a lqrqce+
  mrna13751.1-v1.0-hybrid 450 SGCLIQDMPNGYSRITWVEHAEIEEKPVHQIFSHYAYSGLAFGAHRWLAVLQRQCER 506
                              *******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-1970137IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-2072141IPR009057Homeodomain-like
PROSITE profilePS5007116.74676136IPR001356Homeobox domain
SMARTSM003893.7E-1977140IPR001356Homeobox domain
PfamPF000461.6E-1879134IPR001356Homeobox domain
CDDcd000861.63E-1879137No hitNo description
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PROSITE profilePS5084843.912271509IPR002913START domain
SuperFamilySSF559615.22E-31274508No hitNo description
CDDcd088753.67E-116275505No hitNo description
SMARTSM002342.3E-35280506IPR002913START domain
PfamPF018526.0E-43282506IPR002913START domain
SuperFamilySSF559617.42E-15524758No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MGGGNVVNSE TLFSSPIQNP NFNFMPFQPF SSIVPKEENG LMIKGKEEMM DSGSGSEHAE  60
EKYSEQETEE QQQQQPPKKK RYHRHTAHQI QEMENLFKEC PHPDDKQRQK LSLDLGLKPR  120
QVKFWFQNRR TQMKAQQDRA DNVMLRAEND NLKNENYRLQ AALRNLICPN CGGAAIIGDI  180
AIDEHQLRLE NARLREELER VCCLSGYPGG RQLQTMGPAA PLIAASLDLD MNIYSRHFTD  240
PMMSSCTDHH MIPMSILPPE PSHFPEGGLL LDDEKLLAMK LAASSLEELV KMCTAGEPLW  300
MKNSENGMEM LNAEERARLF PWPMNFKQNS SDLRTEATRD TAVVIMNSIN LVDAFLDANK  360
WMELFPSIVS KAKTVQVISA DPSGQANGSL QLMYAELQVV SPLVPTRETH FLRYCHQNEE  420
EGSWAIVDFP IDSFHGSFQP SFPRYKRWPS GCLIQDMPNG YSRITWVEHA EIEEKPVHQI  480
FSHYAYSGLA FGAHRWLAVL QRQCERVASL MARNISDLGV IPSPEARRNL MRLAQRMIRT  540
FSVNMSTSGG QAWTALSDSP DDTIRITTRK VSEAGQPNGV ILSAVSTTWL PYSHYRVFEL  600
LRDERRRAQL DVFSNGTSLQ EVAHIANGSH PGNCISVLRV NVASNSTQNI ELMLQESCTD  660
QSGSLVVYAT MDVNDIQLAM SGEDPSCIPL LPLGFAIVPV ESPNKSTTTT SPSDQYSRNS  720
GCLMTVGLQV VASPNPSAKL NLSTVTAINN HLCNSVQQII SALGNTTTAT DNGNSVGGGG  780
GSCSEPTAAS SK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13751.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300207.10.0PREDICTED: homeobox-leucine zipper protein HDG5
RefseqXP_011465124.10.0PREDICTED: homeobox-leucine zipper protein HDG5
RefseqXP_011465125.10.0PREDICTED: homeobox-leucine zipper protein HDG5
RefseqXP_011465126.10.0PREDICTED: homeobox-leucine zipper protein HDG5
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLA0A2P6PAJ20.0A0A2P6PAJ2_ROSCH; Putative transcription factor & lipid binding Homobox-WOX family
STRINGXP_004300207.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]