PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13783.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 580aa    MW: 65304.1 Da    PI: 4.3547
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13783.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57e-1870127355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpse..ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr++  +g+Wv+eIr+ps+   g   k+  r +lg+f ta eAa a+++a+k+++g
  mrna13783.1-v1.0-hybrid  70 YRGVRQRI-WGKWVSEIRVPSSntHGlksKKvNRLWLGTFNTAVEAALAYDKAAKAIYG 127
                              9****998.**********8774666976559***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-2769137IPR001471AP2/ERF domain
PROSITE profilePS5103220.75869135IPR001471AP2/ERF domain
SMARTSM003801.0E-3369141IPR001471AP2/ERF domain
PfamPF008471.2E-1070127IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-1770137IPR016177DNA-binding domain
CDDcd000185.36E-2870137No hitNo description
PRINTSPR003675.7E-97081IPR001471AP2/ERF domain
PRINTSPR003675.7E-9101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MMPESSDRDS KKGKRLKVAK TLVKLEKCSE SLGCAKDGLV NPVPRRMPTF GSRKGCMRGK  60
GGPENMNYSY RGVRQRIWGK WVSEIRVPSS NTHGLKSKKV NRLWLGTFNT AVEAALAYDK  120
AAKAIYGPVA RLNFPESLET SMLDETTELG DNASEFEDGM VEGAKQEDEV LDATVKDPVN  180
EWHCEANSVE ELAINSVRES VEECHSELKY VKLELETKDE IAKDDVEVQA VAINNVWESE  240
DEWPREPKYV KCELENEDQL VRNDVEVTVT TNNGREYENV WHWEPKYVNC DLETQDKLLQ  300
SNAEVERLAM NNVTDEEFQA GSYVGSSNNS HDNHLDKYLQ VGKFDSVPNE KPCTNLDFSK  360
ILSRYSNDYL DTALVDVKCN SENDCNPSND VIVDAPVMSK PMEKESVVIL ESGDNSLHME  420
PIYVASNNLI AKLGEYEKNV LPPNEFQGDI AETIKPNGHN GFGDNNICLQ EHDEQIDVAY  480
IPRPDIKPSK DIETQTDIDN NFSHLHSLSF DETYGTELHN LPKQLQAADG MPGSFNYREE  540
ECSGGDFNVD WLRQNYFSGE FEDNALPDSW FSYPHGGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1570135360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13783.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302563.10.0PREDICTED: uncharacterized protein LOC101313427
TrEMBLA0A3Q8TB180.0A0A3Q8TB18_FRAAN; Transcription factor ERF32
STRINGXP_004302563.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2220944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.13e-27ERF family protein