PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna13862.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Nin-like

Protein Properties

Length: 150aa MW: 17106.9 Da PI: 10.4711

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna13862.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.9	2.3e-24	38	88	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +sle++s+yF++p+++AA e++v++T+LK++CR++ IkRWP Rk++sl mrna13862.1-v1.0-hybrid 38 AKMLSLETISQYFYMPMAQAAEEMNVSVTTLKKRCRELRIKRWPNRKLNSL 88 5889*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.449	28	108	IPR003035	RWP-RK domain
Pfam	PF02042	7.9E-22	41	88	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MVTVLGLMEK RVCRPTLSIP LLAILNRSGA SSSSKSRAKM LSLETISQYF YMPMAQAAEE 60 MNVSVTTLKK RCRELRIKRW PNRKLNSLKN LEKSIQDSGK NEEELELLEK ERKLVEEVPD 120 LQLEEKTKRL RQAYLYKAQS SSRSKTASA*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna13862.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004305085.1	1e-102	PREDICTED: protein RKD1-like
Swissprot	Q9M9U9	3e-31	RKD1_ARATH; Protein RKD1
TrEMBL	A0A2P6R8I0	2e-37	A0A2P6R8I0_ROSCH; Putative transcription factor Nin-like family
STRING	XP_004305085.1	1e-102	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF34080	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	8e-23	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	mrna13862.1-v1.0-hybrid