PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13990.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 254aa    MW: 28937.3 Da    PI: 10.2508
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13990.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-14351131699
                              EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                       B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                              l +    a+++         ++l+d++g +W vkl  ++++g+++l+kGW +F++   L+eg f+ F+++   s+f  +v++f+k
  mrna13990.1-v1.0-hybrid  35 LEIKGFVASKYRDF--LANSVILKDPNGAKWPVKL--TRSDGSTWLEKGWLKFAHFYSLEEGYFLFFSYECVdSCF--HVRIFSK 113
                              55555555566322..33469**************..*********************************888999..*****98 PP
2B348.91.2e-15154252398
                              EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS
                       B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83 
                               + +++ + k   l +p ++a+++   g+   ++ + l+ ++g++W+ k +++k+ gr     + +GW++F+k+n+L++gD +v++
  mrna13990.1-v1.0-hybrid 154 VIKVQPTYVKYYHLQIPISYAKNFicRGQ---TRNVDLRIPKGKTWSAKSSVTKQAGRseiARIHGGWSKFAKDNQLRVGDDIVLE 236
                              5556666666667********66676444...557***************997777777789999********************* PP

                              E-SS.SEE..EEEEE- CS
                       B3  84 ldgr.sefelvvkvfr 98 
                              ++++  ++++ v++fr
  mrna13990.1-v1.0-hybrid 237 MIKQqPKTTFEVHIFR 252
                              99888*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-2014114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-1814114IPR015300DNA-binding pseudobarrel domain
CDDcd100175.26E-1719112No hitNo description
PROSITE profilePS5086311.32120114IPR003340B3 DNA binding domain
SMARTSM010191.4E-621114IPR003340B3 DNA binding domain
PfamPF023624.4E-1228114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.8E-18145252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-16146252IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-16151252No hitNo description
PfamPF023621.6E-13152253IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534152253IPR003340B3 DNA binding domain
SMARTSM010190.0011152253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MASSKRRKGN SLAIQEKTPG FFKVVLNKAL QDGKLEIKGF VASKYRDFLA NSVILKDPNG  60
AKWPVKLTRS DGSTWLEKGW LKFAHFYSLE EGYFLFFSYE CVDSCFHVRI FSKNYIEINY  120
PFKSSQHEEP NLGGGDGVKF SSADSFKSTF PFCVIKVQPT YVKYYHLQIP ISYAKNFICR  180
GQTRNVDLRI PKGKTWSAKS SVTKQAGRSE IARIHGGWSK FAKDNQLRVG DDIVLEMIKQ  240
QPKTTFEVHI FRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13990.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295953.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
RefseqXP_011461290.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
RefseqXP_011461291.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2P6QI582e-77A0A2P6QI58_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004295953.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-17B3 family protein