PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14413.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25463.8 Da    PI: 9.688
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14413.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.72.6e-122258945
                             HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             r+  +  R+  i+KK eELS+LC+++v+vi+f +t+k
  mrna14413.1-v1.0-hybrid 22 RKKMYQDRKMNIFKKGEELSILCGIDVLVILFQPTDK 58
                             6667899*************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0072765IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.1011758IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-111891IPR002100Transcription factor, MADS-box
PfamPF003196.4E-111959IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAVPPSPNNR NMELLPDQRR ARKKMYQDRK MNIFKKGEEL SILCGIDVLV ILFQPTDKSS  60
TAQPAAETWP KNPTEVKRII RRYKEKTAST HASSHRTSPL TIRGTTSTPS SSSSSPQSVP  120
EKRKYINLDL SLSGFSDSRT KVLKEDKGKK NLHVQDDDEY INPQEACMDM QFKHPTIWDH  180
AGRGELYDHG ALMFEYDDHQ AKLASLEAKQ KAITERIASL QAAHA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14413.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024196056.11e-107uncharacterized protein LOC112199245
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2218523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.12e-12AGAMOUS-like 82