PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14438.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 471aa    MW: 53168.2 Da    PI: 6.2405
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14438.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.31.5e-138494651374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL  cA++v+sg+  +a+  L+++s+las  gd+mqR+aayfteALa r+++  ++lykal++++ s  + +ee+++ +lf+e
  mrna14438.1-v1.0-hybrid  49 LIQLLQGCAHHVASGSIDQANVWLEQISQLASAGGDTMQRIAAYFTEALADRMLKGLPGLYKALNSTKLS--SIAEEIHIKRLFFE 132
                              6899************************************************************999998..59************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                              ++P+lk+s+++ NqaI+ea+ege++vHiiD+   +++QW++L+q+L++Rpegpp+lRiTg+++    +ke l +++ rL + Ae+ 
  mrna14438.1-v1.0-hybrid 133 LCPFLKLSYVISNQAIVEAMEGEKMVHIIDLHSFEPAQWINLIQTLNARPEGPPHLRITGIHE----QKEVLDQMAARLIEEAEKY 214
                              ***************************************************************....9****************** PP

                     GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll............................................ 214
                              ++pf+fn+ ++++le+l++e+Lrvk+gEalaV++vlqlh+ll                                            
  mrna14438.1-v1.0-hybrid 215 DIPFQFNP-IVSKLENLDVESLRVKTGEALAVCSVLQLHSLLatdddmnrrksplatknlqkvmhinqltlgewlekdpisaysls 299
                              ********.7999************************************************************************* PP

                     GRAS 215 ..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                                          s     +  ++L ++++lsPk++v++eqe++hn++++++r++eal+yy+alfd+le++++r+s er+kvE++l+
  mrna14438.1-v1.0-hybrid 300 pdsslsplslGASP----KMGSFLTALWGLSPKLMVITEQESNHNGHTLMDRIMEALHYYAALFDCLESTVSRASMERQKVEKMLF 381
                              *9886653333333....5677**************************************************************** PP

                     GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              g+ei+n+++ceg++r+erhe+le+W  rle +GF+ v+ls++  +qak +lr ++ dgy+++e++g+lv++W+drpL+svSaWr
  mrna14438.1-v1.0-hybrid 382 GEEIKNIISCEGTDRKERHEKLERWILRLELSGFGRVQLSYHGRMQAKKMLRDCGYDGYEIKEDNGCLVICWHDRPLFSVSAWR 465
                              ***********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.79223445IPR005202Transcription factor GRAS
PfamPF035145.2E-13649465IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MAQEDGSPVT SSAMYFPGLG SPYPWLSPGI GSPYPWLREL KSEERGLCLI QLLQGCAHHV  60
ASGSIDQANV WLEQISQLAS AGGDTMQRIA AYFTEALADR MLKGLPGLYK ALNSTKLSSI  120
AEEIHIKRLF FELCPFLKLS YVISNQAIVE AMEGEKMVHI IDLHSFEPAQ WINLIQTLNA  180
RPEGPPHLRI TGIHEQKEVL DQMAARLIEE AEKYDIPFQF NPIVSKLENL DVESLRVKTG  240
EALAVCSVLQ LHSLLATDDD MNRRKSPLAT KNLQKVMHIN QLTLGEWLEK DPISAYSLSP  300
DSSLSPLSLG ASPKMGSFLT ALWGLSPKLM VITEQESNHN GHTLMDRIME ALHYYAALFD  360
CLESTVSRAS MERQKVEKML FGEEIKNIIS CEGTDRKERH EKLERWILRL ELSGFGRVQL  420
SYHGRMQAKK MLRDCGYDGY EIKEDNGCLV ICWHDRPLFS VSAWRFRRYE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-65334672380Protein SCARECROW
5b3h_D8e-65334672380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14438.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303065.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2P6S8K60.0A0A2P6S8K6_ROSCH; Putative transcription factor GRAS family
STRINGXP_004303065.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]