PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14556.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 228aa    MW: 25468.2 Da    PI: 7.8691
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14556.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_155.61.1e-17157211458
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                              ++r +r++kNRe+A rsR+RK+a++  Le +++ L +eN++L+ e+e+l++ +a+
  mrna14556.1-v1.0-hybrid 157 DRRHKRMIKNRESAARSRARKQAYTNDLEIRIQLLMEENERLRRENEQLSDAAAS 211
                              6899**********************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-14154218IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.358156207IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.5E-14157208No hitNo description
CDDcd147077.17E-25158212No hitNo description
PfamPF001702.6E-15158211IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-12158207No hitNo description
PROSITE patternPS000360161176IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MEEVWKDINL ASLSNANNSP NFRNMTLQDF LARPFANVVS PTPDHHHHNN NNHITLNSPP  60
PPPPPPPPAT VLSLNHLDSD QFQLFCIENL NTTRPFVNLN HPNTSTVSEK SFNGAYPFEG  120
LGSQSSPSPG LVMPSGFGYG NERLPEPDDR SNFGGGDRRH KRMIKNRESA ARSRARKQAY  180
TNDLEIRIQL LMEENERLRR ENEQLSDAAA SQLPKKHSLN RSSTAPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14556.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289074.11e-166PREDICTED: protein FD
TrEMBLA0A2P6RLS84e-81A0A2P6RLS8_ROSCH; Putative transcription factor bZIP family
STRINGXP_004289074.11e-165(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37553252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.12e-23bZIP family protein