PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14750.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 208aa    MW: 23453 Da    PI: 9.9103
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14750.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.7e-10140183344
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                              +WT+   +++ +a +++ ++   +W ++ar +g g++++++k ++
  mrna14750.1-v1.0-hybrid 140 SWTPKQNKQFEKALALYDKDtpdRWQKVARAVG-GKSAEEVKRHY 183
                              7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.224136191IPR017884SANT domain
SMARTSM007178.4E-9137189IPR001005SANT/Myb domain
SuperFamilySSF466891.55E-12139195IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-5140193IPR009057Homeodomain-like
PfamPF002491.5E-7140183IPR001005SANT/Myb domain
CDDcd001673.90E-7141183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAVEACDDGF SEALVKCKRS ADISKRLIHP TVKSKGETIT KVQCMTPLPL SIHTIGTKSK  60
QMYVVMKDVD ENLEKKAIRR NQTPVPDPKV QQYQTPKAKT GDLLTCFFLK LKHNHQTLFP  120
SKCSLLMASN SLSSRSSSSS WTPKQNKQFE KALALYDKDT PDRWQKVARA VGGKSAEEVK  180
RHYEILIEDV KHIESGRIPY PDYRNSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-32133206376RADIALIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14750.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-31RAD-like 6