PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14814.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 263aa    MW: 29141.9 Da    PI: 7.1012
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14814.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.6e-1490135454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+ve +k+L
  mrna14814.1-v1.0-hybrid  90 NHKEAEKRRRERINSHLDKLRSLLPCN-----SKTDKASLLAKVVERVKEL 135
                              8*************************8.....7*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.16E-1480143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.73286135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-1190135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-1390138No hitNo description
Gene3DG3DSA:4.10.280.104.5E-1490144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-1292141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.2E-5176239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MQPENQELYR FLAQNGLING HPYGSLPGGV ANCEFSSSSS AVPLQQSFCS SSSYYSNKYA  60
LNNLEASGVL STTSTDTTTP HDRAQAALNN HKEAEKRRRE RINSHLDKLR SLLPCNSKTD  120
KASLLAKVVE RVKELKQQMS EITELETFPS EADEITVLCS SEDEYSNNGG IIFKASLSCE  180
DRPELLPDLI EILKSLHLKT LKAEMATLGG RIRSVLIVAA DKDHTIESVP FLQNAFKSLL  240
ERSNSSERSK RRRRVLDPTL LV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254KRRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14814.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459488.10.0PREDICTED: transcription factor bHLH106
SwissprotO806744e-72BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2P6QFV91e-149A0A2P6QFV9_ROSCH; Putative transcription factor bHLH family
STRINGXP_004291761.11e-151(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]