PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14875.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family DBB
Protein Properties Length: 187aa    MW: 20516.2 Da    PI: 7.1865
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14875.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.1e-07433534
                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                              C+ +e+  ++ fC  ++  lC+ C ++ H
  mrna14875.1-v1.0-hybrid  4 LCDACESAAAIVFCAADEAALCRACDEKVH 33
                             7**************************998 PP
2zf-B_box27.18.9e-095391337
                 zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                              ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  mrna14875.1-v1.0-hybrid 53 VPRCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91
                             689**************************9996545555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.8E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.239147IPR000315B-box-type zinc finger
CDDcd000214.59E-6345No hitNo description
PfamPF006437.9E-6334IPR000315B-box-type zinc finger
SMARTSM003367.3E-125196IPR000315B-box-type zinc finger
PROSITE profilePS501198.7315196IPR000315B-box-type zinc finger
PfamPF006439.6E-75391IPR000315B-box-type zinc finger
CDDcd000214.24E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCRACDE KVHLCNKLAS RHVRVGLATP SAVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRYLVLRQR VQFPGDKPSS NGEDPASQPP  120
IDQGETRRVQ HQQPRMTIGD NHQNHRASPV RLADANDDGH VKMDNKLIDL NMKPNRMHGQ  180
ASKEDQ*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14875.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU8158277e-46GU815827.1 Fragaria x ananassa clone ChFaM083 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287831.11e-137PREDICTED: B-box zinc finger protein 19-like
SwissprotC0SVM52e-74BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2P6RLZ41e-133A0A2P6RLZ4_ROSCH; Putative transcription factor interactor and regulator Znf-B family
STRINGXP_004287831.11e-136(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.19e-77DBB family protein