PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14913.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family SRS
Protein Properties Length: 374aa    MW: 39633.5 Da    PI: 7.5433
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14913.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702216.55.8e-671302924154
                   DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrelk 79 
                               t+sCqdCGnqakkdC+h+RCRtCCksrgf+CathvkstWvpa+krrerqqq+ +a +++++++            +++kr re++
  mrna14913.1-v1.0-hybrid 130 STVSCQDCGNQAKKDCVHMRCRTCCKSRGFECATHVKSTWVPASKRRERQQQHLTALQQQQQQQqhetvqvirgGGENPKRLRESN 215
                              5789*********************************************8776555544444444788999887667777777775 PP

                   DUF702  80 skkqsalsstk..lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                               ++ s+ ss    +   ++++ le  ++P+e+ s+a+frcvrvss+dd+e+++aYqtav+i+GhvfkGiLy+qG+++
  mrna14913.1-v1.0-hybrid 216 PNNPSSNSSLGacTRIITNTSGLELGNFPPELTSPALFRCVRVSSIDDDEDQYAYQTAVNIAGHVFKGILYNQGPAD 292
                              555544443320023334456788889***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.3E-66131291IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.1E-27133175IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.8E-27243290IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAGFFSLGGG SRNPESRNQY QQPQPSDIPP ETLFWYKNNE EGMPNKGSFE LWQHQQQQLQ  60
HHHHQQQQHQ LHQLQLQQDL YASAAALGVG PSSINVSDES SSRPFMLMRP SSSGGGGGGG  120
GGGGGSTSGS TVSCQDCGNQ AKKDCVHMRC RTCCKSRGFE CATHVKSTWV PASKRRERQQ  180
QHLTALQQQQ QQQQHETVQV IRGGGENPKR LRESNPNNPS SNSSLGACTR IITNTSGLEL  240
GNFPPELTSP ALFRCVRVSS IDDDEDQYAY QTAVNIAGHV FKGILYNQGP ADNNNYNMST  300
GGESSSGGGG GGGGGGGVIQ PLNLINAAPT TAVSGGVTVA AASGSGTLMD PNSLYPANPF  360
MASGTQFFLP PRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112125SGGGGGGGGGGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14913.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462565.10.0PREDICTED: protein SHORT INTERNODES-like
TrEMBLA0A2P6RM301e-160A0A2P6RM30_ROSCH; Putative transcription factor STY-LRP1 family
STRINGXP_004289107.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.18e-73Lateral root primordium (LRP) protein-related