PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15212.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 125aa    MW: 14153.6 Da    PI: 10.412
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15212.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.51.6e-2011100299
                              EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                              +k ++ s+v++  +l lpk+f++++  +k++s ++tl+de+g++++v +     ++r+ l++GWk+F+++++L egD +v++++  
  mrna15212.1-v1.0-hybrid  11 VKLMVYSHVSRVFWLGLPKDFCDANL-VKKKS-DITLQDEHGNQFTVVY----IPERHGLSGGWKKFAQEKKLHEGDAIVLQRT-- 88 
                              688999****************9994.44444.8***************....455566***********************44.. PP

                              SEE..EEEEE-S CS
                       B3  88 sefelvvkvfrk 99 
                                ++l+v++fr+
  mrna15212.1-v1.0-hybrid  89 GPKRLKVHIFRS 100
                              67778*****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.98E-254100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-224100IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-24899No hitNo description
PROSITE profilePS5086313.08410101IPR003340B3 DNA binding domain
SMARTSM010191.6E-1710101IPR003340B3 DNA binding domain
PfamPF023622.7E-1911100IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MGLDSKTPSI VKLMVYSHVS RVFWLGLPKD FCDANLVKKK SDITLQDEHG NQFTVVYIPE  60
RHGLSGGWKK FAQEKKLHEG DAIVLQRTGP KRLKVHIFRS AELLPKIQAE CVSSLEIKKK  120
QRNI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15212.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459534.12e-89PREDICTED: B3 domain-containing protein Os03g0184500-like isoform X2
TrEMBLA0A2P6PYW89e-39A0A2P6PYW8_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_010483399.11e-29(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-23B3 family protein