PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15940.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 270aa    MW: 30341.2 Da    PI: 6.5093
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15940.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-1875123254
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                              +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  mrna15940.1-v1.0-hybrid  75 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 123
                              69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.74E-3374132No hitNo description
Gene3DG3DSA:3.30.730.104.6E-3475132IPR001471AP2/ERF domain
PfamPF008473.9E-1175124IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2175133IPR016177DNA-binding domain
SMARTSM003809.8E-4275138IPR001471AP2/ERF domain
PROSITE profilePS5103221.12775132IPR001471AP2/ERF domain
PRINTSPR003675.3E-117687IPR001471AP2/ERF domain
PRINTSPR003675.3E-1198114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGSIGFVAAG FARFTEYEIC RAQRRRVLHG KMAASRSARW QGELQSSLVF LLITFETSEN  60
VSFSTTTTMA RSQQRYRGVR QRHWGSWVSE IRHPLLKTRI WLGTFETAED AARAYDEAAR  120
LMCGPKARTN FPFNPNDDMS HSSNLLSSAL IAKLHKCNMA SLQMTKKPAS KEEPVQEVVM  180
QQQYMPSGTS TASCIVENSG FSGFDWSEKR EYGGAQCGAG NWVGETGVKV ENYDHHMEFS  240
QPLEEDHIEQ MIEELLDYGY IELCPGIQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1674136467ATERF1
3gcc_A2e-1674136467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15940.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305484.11e-153PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW53e-63ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A3Q8TBF91e-148A0A3Q8TBF9_FRAAN; Transcription factor ERF38
STRINGXP_004305484.11e-152(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-53ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]