PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16050.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 444aa    MW: 48809.6 Da    PI: 6.799
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16050.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.33e-23223321195
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f k+ltps +++ g +++p+ +a+++        +++ +  tl+++d++g +W++++iyr++++r++lt+GW++Fv+++ L +gD+
  mrna16050.1-v1.0-hybrid 223 FAKILTPSEANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLSVTDLHGVVWDFRHIYRGTPRRHLLTTGWSKFVNSKMLVAGDS 306
                              89*********************999****985444444..9******************************************** PP

                              EEEEE-SSSEE..EEE CS
                       B3  80 vvFkldgrsefelvvk 95 
                              vvF++++ +++e++v+
  mrna16050.1-v1.0-hybrid 307 VVFMRSS-RGGEMYVG 321
                              ****765.67777776 PP
2Auxin_resp51.15.7e-183664222883
               Auxin_resp  28 vekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                              +e vekal+v +++GmR+kma+et+dss+ ++ +G  ++v   ++  W++S+Wr+L+
  mrna16050.1-v1.0-hybrid 366 AEVVEKALNVFWTAGMRVKMAMETDDSSRMTWfQGALSSVFVPESGPWKGSPWRMLQ 422
                              67899**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-32213321IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-26217323IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-20222320No hitNo description
SMARTSM010191.2E-15223333IPR003340B3 DNA binding domain
PROSITE profilePS5086312.139223326IPR003340B3 DNA binding domain
PfamPF023625.7E-21223321IPR003340B3 DNA binding domain
PfamPF065077.6E-15365422IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MGYKGHISDE EAAASDGFQS AHESDSDGED VGPFKAYQVM LHPIAGVSEW EPIERKIAPP  60
LYRRQPGRQK KNRTKGLGET APPPGTEKLP RSFYSRVSCG TCNQRGHNAR SCARRNQVVN  120
ENVGMEQENV QEQVPQQNPT SSMPNLDNHI INENENVNLN VNINTTPESG THNVVQPNSQ  180
IPYSLGGSEG LARGFKPRQS PRLAAKSGTS TQNSENDDKV VSFAKILTPS EANNGGGFSV  240
PRFCADSIFP PLNYQAEPPV QTLSVTDLHG VVWDFRHIYR GTPRRHLLTT GWSKFVNSKM  300
LVAGDSVVFM RSSRGGEMYV GQVESHIGLK SSSEEGSGGD GFKKKLSEEA VVEAAEMAAQ  360
EMPFEAEVVE KALNVFWTAG MRVKMAMETD DSSRMTWFQG ALSSVFVPES GPWKGSPWRM  420
LQVFHFSSRI LALNALWWLL ASH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-34223423158368Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16050.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465821.11e-124PREDICTED: auxin response factor 17, partial
SwissprotQ84WU65e-82ARFQ_ARATH; Auxin response factor 17
STRINGXP_004301788.11e-123(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.17e-54auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]