PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16296.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CAMTA
Protein Properties Length: 1193aa    MW: 134132 Da    PI: 6.0799
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16296.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-174.91.1e-2389166281
                     CG-1   2 lkekkrwlkneeiaaiLenfekheltl...elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg.vevl 81 
                              l+ k+rwl++ ei++iL+n++k+++++   +++ +p  g+l      ++ryfrkDG++w+kkkdgktv+E+he+LK     +vl
  mrna16296.1-v1.0-hybrid  89 LEAKHRWLRPAEICEILQNYKKFHISTepaSTPPEPARGHL------VLRYFRKDGHNWRKKKDGKTVKEAHERLKKTDhFQVL 166
                              6679*********************9944444555566666......569*************************853325555 PP
2CG-1599.1e-1920525469118
                     CG-1  69 dhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                              +   L+ g+v+vl+cyYah+e+n++fqrr+yw+Lee+l++ivlvhy+evk
  mrna16296.1-v1.0-hybrid 205 TDIGLRAGSVDVLHCYYAHGEDNENFQRRSYWMLEEDLSHIVLVHYREVK 254
                              55679999***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143762.42684259IPR005559CG-1 DNA-binding domain
SMARTSM010768.0E-4587254IPR005559CG-1 DNA-binding domain
PfamPF038597.9E-1990160IPR005559CG-1 DNA-binding domain
PfamPF038593.2E-15204252IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.8E-6617703IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.26E-18618703IPR014756Immunoglobulin E-set
PfamPF018337.8E-7618702IPR002909IPT domain
PROSITE profilePS5029718.139783922IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.48E-17797912IPR020683Ankyrin repeat-containing domain
CDDcd002048.97E-13798910No hitNo description
Gene3DG3DSA:1.25.40.203.4E-17801914IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.217851883IPR002110Ankyrin repeat
SMARTSM002480.032851880IPR002110Ankyrin repeat
SMARTSM00248260890919IPR002110Ankyrin repeat
SuperFamilySSF525401.33E-710091069IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000152310181040IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.08910201048IPR000048IQ motif, EF-hand binding site
PfamPF006120.1810211039IPR000048IQ motif, EF-hand binding site
SMARTSM000150.001710411063IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.59710421066IPR000048IQ motif, EF-hand binding site
PfamPF006121.3E-410441063IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1193 aa     Download sequence    Send to blast
MKYRLDLGVQ SNYILYAIGI NVSHSWKKTK ASDIQLSSPC VFPKMFRLRD FLFGEDPYGY  60
IRRGSALGFC IAEAKTKVCS ILDIQQILLE AKHRWLRPAE ICEILQNYKK FHISTEPAST  120
PPEPARGHLV LRYFRKDGHN WRKKKDGKTV KEAHERLKKT DHFQVLMEIW VNLRLRLVCR  180
LIKANELSSL SFLLASAELQ LNLETDIGLR AGSVDVLHCY YAHGEDNENF QRRSYWMLEE  240
DLSHIVLVHY REVKGNRTNF NHVKETEGVA YSNGAEQSAR QSEMENSVSS SFNPSSYQMH  300
SQTTEATSLS SAQASEFEDA ESAFYNQASS RLQPMAEKIN SEFADAYYPT FSNDFQEKLS  360
TIPGVDFSSL SQAYKGEDSI HAGITHEPRK DRDFALWDDM ENSATGVQSF QPSFSATHSD  420
TMGSFPKQEI ETIGHLYTDS FDKRLVYGME NRPKVQQSWQ TSEGSSNWPM DQSIQSHAQY  480
NVTSKLHDGA DATDLLKSLG PFLMDSDKQN DLQFHLSNTD SISKRNDIIE GKADYPSAIK  540
PLLDGAFGDG LKKLDSFNRW MSKELEDVDE PQMQSSSGAY WETVESENEV DESSVPLQVR  600
LDSYMLGPSL SHDQLFSIVD FSPSWAYENS EIKVLITGRF LKSQHAESCK WSCMFGEVEV  660
PAEVIADGVL RCYTPIHKAG RVPFYVTCSN RLACSEVREF EYRVAETQDV DCKDYYSDFS  720
NETLSMRFGN FLTLSSTSPN CDPASIAENS EVNSKITSLL KNDNDEWDKM LQLTSDEDFS  780
LKRVEEQLHQ QLLKEKLHAW LLQKLAAGGK GPNVLDEGGQ GVLHFGAALG YDWVLLPTIT  840
AGVSVNFRDV NGWTALHWAA FCGRERTVAS LISLGAAPGA LTDPTAKYPS GETPADLASE  900
QGHKGIAGYL AESALSKHLE SLNLDIKDGN SAEISGAKAV SGSSRDGELT DGLSLRDSLT  960
AVCNATQAAA RIHQVFRVQS FQRKQLKEYG GDKFGISNER ALSLIAVKSH KAGKRDEHVD  1020
AAAVRIQNKF RSWKGRKDFL IIRQRIVKIQ AHVRGHQVRK NYKKIVWTVG IVEKIILRWR  1080
RKGSGLRGFK PEPLTEGPSM QVSSTKEDDD DVLKEGRKQT EERMQKALAR VKSMAQYPEA  1140
RDQYRRLLNV VTEIQETKVL NSSEGTSAYM DDDLIDIEAL FDDDVFMPTA TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A3e-14618703989calmodulin binding transcription activator 1
2cxk_B3e-14618703989calmodulin binding transcription activator 1
2cxk_C3e-14618703989calmodulin binding transcription activator 1
2cxk_D3e-14618703989calmodulin binding transcription activator 1
2cxk_E3e-14618703989calmodulin binding transcription activator 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16296.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4345404e-36AM434540.2 Vitis vinifera contig VV78X210461.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288193.10.0PREDICTED: calmodulin-binding transcription activator 3-like
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A2P6RQI80.0A0A2P6RQI8_ROSCH; Putative transcription factor CG1-CAMTA family
STRINGXP_004288193.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82842735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]