PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16361.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family EIL
Protein Properties Length: 415aa    MW: 47250.3 Da    PI: 4.8973
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16361.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3371.61.3e-113242641250
                              XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                     EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpveg 86 
                              eelkkrmwkd+++l++ ke +k+    +e+ ++ +k    +e++rrkkm+raQD+iLkYM+k+mevc+a+GfvYgi+p+kgkpv+g
  mrna16361.1-v1.0-hybrid  24 EELKKRMWKDRVRLEKFKEIRKS----EEP-VSLAK----EEASRRKKMARAQDSILKYMVKIMEVCEARGFVYGIVPKKGKPVTG 100
                              8**************88888886....677.55544....8********************************************* PP

                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH CS
                     EIN3  87 asdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPW 172
                              +sdsLr+WWk++v+fd+n+p aisky ++ l+ +  ss   + +s+ h l++lqDTtlgSLLsalmqhc ppqrrfplekg++pPW
  mrna16361.1-v1.0-hybrid 101 SSDSLREWWKDNVQFDQNAPLAISKYLPEVLLEQACSSGLDQDNSYVHLLHDLQDTTLGSLLSALMQHCIPPQRRFPLEKGLAPPW 186
                              **************************99888877766666679******************************************* PP

                              ---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHH CS
                     EIN3 173 WPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvl 250
                              WP+G+e wwg +g+s+++g+ppy+kphdlkkawkvs L+avikhm p+++++r+l+rqsk+lqdkm+ake +++++v 
  mrna16361.1-v1.0-hybrid 187 WPKGNEIWWGDQGVSQEHGPPPYRKPHDLKKAWKVSALAAVIKHMVPNMDRVRRLVRQSKSLQDKMTAKEAAIWSKVR 264
                              **************************************************************************9984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048739.7E-11424263No hitNo description
Gene3DG3DSA:1.10.3180.101.3E-62144263IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167687.06E-56147263IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MVEIVEEVDH LSLEDEEAED ISYEELKKRM WKDRVRLEKF KEIRKSEEPV SLAKEEASRR  60
KKMARAQDSI LKYMVKIMEV CEARGFVYGI VPKKGKPVTG SSDSLREWWK DNVQFDQNAP  120
LAISKYLPEV LLEQACSSGL DQDNSYVHLL HDLQDTTLGS LLSALMQHCI PPQRRFPLEK  180
GLAPPWWPKG NEIWWGDQGV SQEHGPPPYR KPHDLKKAWK VSALAAVIKH MVPNMDRVRR  240
LVRQSKSLQD KMTAKEAAIW SKVRKCMFDD DDGSELDAPV HVFPKTSNSE WALGFVDKKS  300
RASHNGKNVS DTTVRVDTSC SYDHSPIDSE FESVVDWINM ELQKASVNEA GEVVSGCPSA  360
YWEGVMEDSA LDAAFEIQRE NMDLNLYPDE GISQMNQEPT SIWDLGYDYN DANL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A9e-551452631119Protein ETHYLENE INSENSITIVE 3
4zds_B9e-551452631119Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16361.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457546.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-121EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A251NTY71e-159A0A251NTY7_PRUPE; Uncharacterized protein
TrEMBLA0A498KMG61e-159A0A498KMG6_MALDO; Uncharacterized protein
STRINGXP_004289321.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32234200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.11e-118EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]