PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16807.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 762aa    MW: 84073.5 Da    PI: 6.0785
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16807.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.6e-31280337259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES-.-SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYege.Hnhe 59 
                              +DgynWrKYGqK+vkgse+prsYY+Ct+++C vkkkvers  d++++ei+Y+g  Hnh 
  mrna16807.1-v1.0-hybrid 280 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCLVKKKVERSF-DGQITEIIYKGApHNHA 337
                              7****************************************.**********9669996 PP
2WRKY104.36.7e-33498556159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY+CtsagC v+k+ver+++d k+v++tYeg+Hnhe
  mrna16807.1-v1.0-hybrid 498 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASHDLKYVITTYEGKHNHE 556
                              59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-26277339IPR003657WRKY domain
SuperFamilySSF1182902.75E-23279339IPR003657WRKY domain
SMARTSM007744.9E-34279338IPR003657WRKY domain
PfamPF031061.1E-22280336IPR003657WRKY domain
PROSITE profilePS5081123.445280339IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-36483558IPR003657WRKY domain
SuperFamilySSF1182901.83E-28491558IPR003657WRKY domain
PROSITE profilePS5081138.251493558IPR003657WRKY domain
SMARTSM007745.3E-38498557IPR003657WRKY domain
PfamPF031067.8E-25499556IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MGFVSRMEQA NNDKAKYGGG GSVSIAERRA AKCGFNAERI NTPRFRKNTA SPLPSPADRS  60
PGHLTLPPGI SPTALLDSPM MLPNSQALPS PTTGTFPMLP PNGDSSMVKS ATNEDVHRTF  120
NSSFMLKNQG DPKYLPGYSG FENQMALPSK FRPSADAAIM FNSNQESNIL FDEVDRLMGS  180
NVDYEALVLE QQPMDFEFPM EFPEELNAKN YAVDPSNDKN LNSVIMNENC VDLQMPHSSI  240
ASDHNSLPKE IIHGEDVETH QLLEGEHKGY PSLGMARNSE DGYNWRKYGQ KQVKGSEYPR  300
SYYKCTHPNC LVKKKVERSF DGQITEIIYK GAPHNHAQPQ PNRRAAASLG LAFSFDEMSE  360
MAEGNRTSVK ADRDSVWAKI QSGEDIKSGY DGKTDGLERT SSTSVVTDLS DPLSATQGKS  420
PAIFESAETP EFSSALASLD EDDQAAQRGI SLGDDGDNEE SESKRRKKDS CMIETSIASR  480
AVREPRVVVQ IESEIDILDD GYRWRKYGQK VVKGNPNPRS YYKCTSAGCL VRKHVERASH  540
DLKYVITTYE GKHNHEVPAA RNSNHINSSG ANGHTPAASA QPLALSRNTN IPKPETQVQD  600
LAPHFDRKPE FHDEYLRPTY LGNFNNDLKF GASSIYQMKF PPLQNAMPYG SYGLNASHHN  660
VAHQAGSVVP DFSMSLPLNL PPTGNLGLTG YDFNNGKSVC PVQPYYSGQQ LQENDLRFLK  720
PKQEQKDENL YDACLPIIDQ GTASLSPNSS LFYRIMGGYS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-32280559878Probable WRKY transcription factor 4
2lex_A4e-32280559878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16807.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304815.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
TrEMBLA0A2P6R5300.0A0A2P6R530_ROSCH; Putative transcription factor WRKY family
STRINGXP_004304815.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.15e-88WRKY DNA-binding protein 34