PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16844.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 1091aa    MW: 120290 Da    PI: 8.4759
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16844.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.7e-23312413199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD+
  mrna16844.1-v1.0-hybrid 312 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDS 395
                              89****************************996555555..8******************************************** PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              +vF   +++++ l+v+++r+
  mrna16844.1-v1.0-hybrid 396 IVFL--RSENGDLCVGIRRA 413
                              ****..4478889****996 PP
2Auxin_resp110.71.4e-36489572183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                              aa+ a+++++Fevv++Prast+eF+vk++ v++a++v+++ GmRfkmafeted+s++++ +Gt+++v+  d +rWpnS+Wr+L+
  mrna16844.1-v1.0-hybrid 489 AASLAEKGQPFEVVFYPRASTPEFCVKASAVRAAVRVQWCSGMRFKMAFETEDCSRISWfMGTITSVQVNDKIRWPNSPWRVLQ 572
                              688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-38302415IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.76E-29305415IPR015300DNA-binding pseudobarrel domain
CDDcd100174.10E-21311412No hitNo description
PROSITE profilePS5086313.155312414IPR003340B3 DNA binding domain
SMARTSM010192.0E-22312414IPR003340B3 DNA binding domain
PfamPF023628.2E-22312413IPR003340B3 DNA binding domain
PfamPF065074.9E-32489572IPR010525Auxin response factor
PROSITE profilePS5174515.978804884IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1091 aa     Download sequence    Send to blast
MSEAESIKTS SSVTRQVRTS DAPHPSLPSH HHLPLTPGQN IADPHFPPTS LPGASLHLPG  60
LPANPAHHEI ACHSTYYSPQ YLKVMRLSSD LGVSPNFVFI KGSWREKRKL SVFRSDYIWL  120
MNATNTKTGI RRGADREKIQ SHFEEGERVS GSELVKVKKT KIGLLLVGLY ISFLIEKILL  180
YMRKVNAAMN SMAVMMMVVA EVQKQMEKTL DPQLWHACAG GMVQMPPVNS KVFYFPQGHA  240
EHAQTHVDFP ASVRIPSLIL CRVAGIRYMA DPETDEVLAR IRLVPSETNE LYNDEGPVDS  300
DGSDNQEKSS SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVIAKDVHGE  360
VWKFRHIYRG TPRRHLLTTG WSTFVNQKKL VAGDSIVFLR SENGDLCVGI RRAKRGLLEG  420
SPESVSAASG WNHGRSGGPP YSGFSVFLKE EESKMGRNGF GNSSESGNVR GGRGGVGGGR  480
VRPEAVVEAA SLAEKGQPFE VVFYPRASTP EFCVKASAVR AAVRVQWCSG MRFKMAFETE  540
DCSRISWFMG TITSVQVNDK IRWPNSPWRV LQVTWDEPDL LQNVKCVSPW LIELVSNFPI  600
IHMAPFSPPR KKLRILQHPD FTLDRQLTLP SFSGNPLGSS SPMCCLPDNT PAGIQGARHA  660
QLRISLTNLH FNSKLQSGLF SSSFQRFDQN SRIPNGIRNG DTNSNESLSC SLTMGNSIQN  720
LEKSDNVKKH QFLLFGQPIL TEQQMSRSCS SDAVSQVLAG KNLKDENQGR KRFLSVGSDS  780
AIEHWGSLEK SALNKELHVL DLDTGHCKVF MESEDVGRTL DLSALGSYDE LDRRLTIMFG  840
LEKPEMLSHV LYRDPTGVVK QTGDEPFGIF KKAAKRLTIL TCPANETIGR TWIRGMENAG  900
NGLGASNKTA WGFLAVERDQ HSGCVVSLAS SWNYIEGGGI GSARQPSLAW RSFGFSLLVC  960
DVVFGAMVVF HLALIRDGVQ WSVWVATLIE EKVFLFSGGF VDNNDGGWDV DSLPVATLAK  1020
RCAAAGTQTW ARVALDWIRP FLWVVALGPK WSMSERSTSS PANERPEMVA TGGNLLCVGW  1080
TSQNDRLLQV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-7219659837393Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1470478GGRGGVGGG
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16844.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459440.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2P6QH970.0A0A2P6QH97_ROSCH; Auxin response factor
STRINGXP_004293136.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]